Literature DB >> 29577115

Neighborhood Matching for Curved Domains with Application to Denoising in Diffusion MRI.

Geng Chen1, Bin Dong2, Yong Zhang3, Dinggang Shen1, Pew-Thian Yap1.   

Abstract

In this paper, we introduce a strategy for performing neighborhood matching on general non-Euclidean and non-flat domains. Essentially, this involves representing the domain as a graph and then extending the concept of convolution from regular grids to graphs. Acknowledging the fact that convolutions are features of local neighborhoods, neighborhood matching is carried out using the outcome of multiple convolutions at multiple scales. All these concepts are encapsulated in a sound mathematical framework, called graph framelet transforms (GFTs), which allows signals residing on non-flat domains to be decomposed according to multiple frequency subbands for rich characterization of signal patterns. We apply GFTs to the problem of denoising of diffusion MRI data, which can reside on domains defined in very different ways, such as on a shell, on multiple shells, or on a Cartesian grid. Our non-local formulation of the problem allows information of diffusion signal profiles of drastically different orientations to be borrowed for effective denoising.

Entities:  

Mesh:

Year:  2017        PMID: 29577115      PMCID: PMC5860684          DOI: 10.1007/978-3-319-66182-7_72

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  4 in total

1.  An optimized blockwise nonlocal means denoising filter for 3-D magnetic resonance images.

Authors:  P Coupe; P Yger; S Prima; P Hellier; C Kervrann; C Barillot
Journal:  IEEE Trans Med Imaging       Date:  2008-04       Impact factor: 10.048

2.  XQ-NLM: Denoising Diffusion MRI Data via x-q Space Non-Local Patch Matching.

Authors:  Geng Chen; Yafeng Wu; Dinggang Shen; Pew-Thian Yap
Journal:  Med Image Comput Comput Assist Interv       Date:  2016-10-02

3.  Non Local Spatial and Angular Matching: Enabling higher spatial resolution diffusion MRI datasets through adaptive denoising.

Authors:  Samuel St-Jean; Pierrick Coupé; Maxime Descoteaux
Journal:  Med Image Anal       Date:  2016-03-18       Impact factor: 8.545

4.  Denoising Magnetic Resonance Images Using Collaborative Non-Local Means.

Authors:  Geng Chen; Pei Zhang; Yafeng Wu; Dinggang Shen; Pew-Thian Yap
Journal:  Neurocomputing       Date:  2016-02-12       Impact factor: 5.719

  4 in total
  6 in total

1.  Reconstructing High-Quality Diffusion MRI Data from Orthogonal Slice-Undersampled Data Using Graph Convolutional Neural Networks.

Authors:  Yoonmi Hong; Geng Chen; Pew-Thian Yap; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

2.  Multifold Acceleration of Diffusion MRI via Deep Learning Reconstruction from Slice-Undersampled Data.

Authors:  Yoonmi Hong; Geng Chen; Pew-Thian Yap; Dinggang Shen
Journal:  Inf Process Med Imaging       Date:  2019-05-22

3.  MK-curve - Characterizing the relation between mean kurtosis and alterations in the diffusion MRI signal.

Authors:  Fan Zhang; Lipeng Ning; Lauren J O'Donnell; Ofer Pasternak
Journal:  Neuroimage       Date:  2019-04-10       Impact factor: 6.556

4.  Multi-channel framelet denoising of diffusion-weighted images.

Authors:  Geng Chen; Jian Zhang; Yong Zhang; Bin Dong; Dinggang Shen; Pew-Thian Yap
Journal:  PLoS One       Date:  2019-02-06       Impact factor: 3.240

5.  Robust Fusion of Diffusion MRI Data for Template Construction.

Authors:  Zhanlong Yang; Geng Chen; Dinggang Shen; Pew-Thian Yap
Journal:  Sci Rep       Date:  2017-10-11       Impact factor: 4.379

6.  Angular Upsampling in Infant Diffusion MRI Using Neighborhood Matching in x-q Space.

Authors:  Geng Chen; Bin Dong; Yong Zhang; Weili Lin; Dinggang Shen; Pew-Thian Yap
Journal:  Front Neuroinform       Date:  2018-09-07       Impact factor: 4.081

  6 in total

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