Literature DB >> 29570352

Ribosome-Targeting Antibiotics: Modes of Action, Mechanisms of Resistance, and Implications for Drug Design.

Jinzhong Lin1, Dejian Zhou1, Thomas A Steitz2,3,4, Yury S Polikanov5, Matthieu G Gagnon2,4,6.   

Abstract

Genetic information is translated into proteins by the ribosome. Structural studies of the ribosome and of its complexes with factors and inhibitors have provided invaluable information on the mechanism of protein synthesis. Ribosome inhibitors are among the most successful antimicrobial drugs and constitute more than half of all medicines used to treat infections. However, bacterial infections are becoming increasingly difficult to treat because the microbes have developed resistance to the most effective antibiotics, creating a major public health care threat. This has spurred a renewed interest in structure-function studies of protein synthesis inhibitors, and in few cases, compounds have been developed into potent therapeutic agents against drug-resistant pathogens. In this review, we describe the modes of action of many ribosome-targeting antibiotics, highlight the major resistance mechanisms developed by pathogenic bacteria, and discuss recent advances in structure-assisted design of new molecules.

Entities:  

Keywords:  antibiotic resistance; antibiotics; drug design; mechanisms of inhibition; protein synthesis; ribosome

Mesh:

Substances:

Year:  2018        PMID: 29570352      PMCID: PMC9176271          DOI: 10.1146/annurev-biochem-062917-011942

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   27.258


  150 in total

Review 1.  Translation regulation via nascent polypeptide-mediated ribosome stalling.

Authors:  Daniel N Wilson; Stefan Arenz; Roland Beckmann
Journal:  Curr Opin Struct Biol       Date:  2016-02-07       Impact factor: 6.809

2.  Negamycin binds to the wall of the nascent chain exit tunnel of the 50S ribosomal subunit.

Authors:  Susan J Schroeder; Gregor Blaha; Peter B Moore
Journal:  Antimicrob Agents Chemother       Date:  2007-07-30       Impact factor: 5.191

3.  Spontaneous intersubunit rotation in single ribosomes.

Authors:  Peter V Cornish; Dmitri N Ermolenko; Harry F Noller; Taekjip Ha
Journal:  Mol Cell       Date:  2008-06-06       Impact factor: 17.970

4.  Contribution of 16S rRNA nucleotides forming the 30S subunit A and P sites to translation in Escherichia coli.

Authors:  Nimo M Abdi; Kurt Fredrick
Journal:  RNA       Date:  2005-09-21       Impact factor: 4.942

5.  Structural analysis of kasugamycin inhibition of translation.

Authors:  Barbara S Schuwirth; J Michael Day; Cathy W Hau; Gary R Janssen; Albert E Dahlberg; Jamie H Doudna Cate; Antón Vila-Sanjurjo
Journal:  Nat Struct Mol Biol       Date:  2006-09-24       Impact factor: 15.369

Review 6.  Telithromycin: a ketolide antibiotic for treatment of respiratory tract infections.

Authors:  John R Lonks; Donald A Goldmann
Journal:  Clin Infect Dis       Date:  2005-04-22       Impact factor: 9.079

7.  The Ribosomal Protein uL22 Modulates the Shape of the Protein Exit Tunnel.

Authors:  Itai Wekselman; Ella Zimmerman; Chen Davidovich; Matthew Belousoff; Donna Matzov; Miri Krupkin; Haim Rozenberg; Anat Bashan; Gilgi Friedlander; Jette Kjeldgaard; Hanne Ingmer; Lasse Lindahl; Janice M Zengel; Ada Yonath
Journal:  Structure       Date:  2017-07-06       Impact factor: 5.006

8.  Catalysis of ribosomal translocation by sparsomycin.

Authors:  Kurt Fredrick; Harry F Noller
Journal:  Science       Date:  2003-05-16       Impact factor: 47.728

9.  Structures of the orthosomycin antibiotics avilamycin and evernimicin in complex with the bacterial 70S ribosome.

Authors:  Stefan Arenz; Manuel F Juette; Michael Graf; Fabian Nguyen; Paul Huter; Yury S Polikanov; Scott C Blanchard; Daniel N Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-21       Impact factor: 11.205

10.  Alterations at the peptidyl transferase centre of the ribosome induced by the synergistic action of the streptogramins dalfopristin and quinupristin.

Authors:  Jörg M Harms; Frank Schlünzen; Paola Fucini; Heike Bartels; Ada Yonath
Journal:  BMC Biol       Date:  2004-04-01       Impact factor: 7.431

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  56 in total

1.  Structure of Dirithromycin Bound to the Bacterial Ribosome Suggests New Ways for Rational Improvement of Macrolides.

Authors:  Nelli F Khabibullina; Andrey G Tereshchenkov; Ekaterina S Komarova; Egor A Syroegin; Dmitrii I Shiriaev; Alena Paleskava; Victor G Kartsev; Alexey A Bogdanov; Andrey L Konevega; Olga A Dontsova; Petr V Sergiev; Ilya A Osterman; Yury S Polikanov
Journal:  Antimicrob Agents Chemother       Date:  2019-05-24       Impact factor: 5.191

Review 2.  Ribosome protection by ABC-F proteins-Molecular mechanism and potential drug design.

Authors:  Rya Ero; Veerendra Kumar; Weixin Su; Yong-Gui Gao
Journal:  Protein Sci       Date:  2019-03-04       Impact factor: 6.725

Review 3.  Progress and challenges in aminoacyl-tRNA synthetase-based therapeutics.

Authors:  Christopher S Francklyn; Patrick Mullen
Journal:  J Biol Chem       Date:  2019-01-22       Impact factor: 5.157

4.  Ribosome-Mediated Attenuation of vga(A) Expression Is Shaped by the Antibiotic Resistance Specificity of Vga(A) Protein Variants.

Authors:  Vladimir Vimberg; Jorunn Pauline Cavanagh; Michaela Novotna; Jakub Lenart; Bich Nguyen Thi Ngoc; Jana Vesela; Maria Pain; Marketa Koberska; Gabriela Balikova Novotna
Journal:  Antimicrob Agents Chemother       Date:  2020-10-20       Impact factor: 5.191

Review 5.  How Macrolide Antibiotics Work.

Authors:  Nora Vázquez-Laslop; Alexander S Mankin
Journal:  Trends Biochem Sci       Date:  2018-07-24       Impact factor: 13.807

6.  Antibacterial Discovery via Phenotypic DNA-Encoded Library Screening.

Authors:  Wesley G Cochrane; Patrick R Fitzgerald; Brian M Paegel
Journal:  ACS Chem Biol       Date:  2021-11-20       Impact factor: 5.100

7.  Blasticidin S inhibits mammalian translation and enhances production of protein encoded by nonsense mRNA.

Authors:  Kyle T Powers; Flint Stevenson-Jones; Sathish K N Yadav; Beate Amthor; Joshua C Bufton; Ufuk Borucu; Dakang Shen; Jonas P Becker; Daria Lavysh; Matthias W Hentze; Andreas E Kulozik; Gabriele Neu-Yilik; Christiane Schaffitzel
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

8.  RNA Drugs and RNA Targets for Small Molecules: Principles, Progress, and Challenges.

Authors:  Ai-Ming Yu; Young Hee Choi; Mei-Juan Tu
Journal:  Pharmacol Rev       Date:  2020-10       Impact factor: 25.468

Review 9.  New approaches to target RNA binding proteins.

Authors:  Ashley R Julio; Keriann M Backus
Journal:  Curr Opin Chem Biol       Date:  2021-01-31       Impact factor: 8.822

Review 10.  ABC-F translation factors: from antibiotic resistance to immune response.

Authors:  Corentin R Fostier; Laura Monlezun; Farès Ousalem; Shikha Singh; John F Hunt; Grégory Boël
Journal:  FEBS Lett       Date:  2020-12-04       Impact factor: 4.124

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