Literature DB >> 12750524

Catalysis of ribosomal translocation by sparsomycin.

Kurt Fredrick1, Harry F Noller.   

Abstract

During protein synthesis, transfer RNAs (tRNAs) are translocated from the aminoacyl to peptidyl to exit sites of the ribosome, coupled to the movement of messenger RNA (mRNA), in a reaction catalyzed by elongation factor G (EF-G) and guanosine triphosphate (GTP). Here, we show that the peptidyl transferase inhibitor sparsomycin triggers accurate translocation in vitro in the absence of EF-G and GTP. Our results provide evidence that translocation is a function inherent to the ribosome and that the energy to drive this process is stored in the tRNA-mRNA-ribosome complex after peptide-bond formation. These findings directly implicate the peptidyl transferase center of the 50S subunit in the mechanism of translocation, a process involving large-scale movement of tRNA and mRNA in the 30S subunit, some 70 angstroms away.

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Year:  2003        PMID: 12750524     DOI: 10.1126/science.1084571

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  73 in total

1.  EF-G-independent reactivity of a pre-translocation-state ribosome complex with the aminoacyl tRNA substrate puromycin supports an intermediate (hybrid) state of tRNA binding.

Authors:  Divya Sharma; Daniel R Southworth; Rachel Green
Journal:  RNA       Date:  2004-01       Impact factor: 4.942

2.  Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy.

Authors:  Niels Fischer; Andrey L Konevega; Wolfgang Wintermeyer; Marina V Rodnina; Holger Stark
Journal:  Nature       Date:  2010-07-15       Impact factor: 49.962

3.  Evolution of protein synthesis from an RNA world.

Authors:  Harry F Noller
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-04-01       Impact factor: 10.005

4.  X-ray crystallography study on ribosome recycling: the mechanism of binding and action of RRF on the 50S ribosomal subunit.

Authors:  Daniel N Wilson; Frank Schluenzen; Joerg M Harms; Takuya Yoshida; Tadayasu Ohkubo; Renate Albrecht; Joerg Buerger; Yuji Kobayashi; Paola Fucini
Journal:  EMBO J       Date:  2004-12-23       Impact factor: 11.598

5.  Destabilization of the P site codon-anticodon helix results from movement of tRNA into the P/E hybrid state within the ribosome.

Authors:  Kevin G McGarry; Sarah E Walker; Huanyu Wang; Kurt Fredrick
Journal:  Mol Cell       Date:  2005-11-23       Impact factor: 17.970

6.  Multiple effects of S13 in modulating the strength of intersubunit interactions in the ribosome during translation.

Authors:  Anthony R Cukras; Rachel Green
Journal:  J Mol Biol       Date:  2005-04-12       Impact factor: 5.469

7.  The hybrid state of tRNA binding is an authentic translation elongation intermediate.

Authors:  Silke Dorner; Julie L Brunelle; Divya Sharma; Rachel Green
Journal:  Nat Struct Mol Biol       Date:  2006-02-26       Impact factor: 15.369

8.  tRNA Fluctuations Observed on Stalled Ribosomes Are Suppressed during Ongoing Protein Synthesis.

Authors:  Ryan M Jamiolkowski; Chunlai Chen; Barry S Cooperman; Yale E Goldman
Journal:  Biophys J       Date:  2017-12-05       Impact factor: 4.033

9.  The ribosome moves: RNA mechanics and translocation.

Authors:  Harry F Noller; Laura Lancaster; Jie Zhou; Srividya Mohan
Journal:  Nat Struct Mol Biol       Date:  2017-12-07       Impact factor: 15.369

Review 10.  Ribosomal translocation: one step closer to the molecular mechanism.

Authors:  Shinichiro Shoji; Sarah E Walker; Kurt Fredrick
Journal:  ACS Chem Biol       Date:  2009-02-20       Impact factor: 5.100

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