Literature DB >> 33535093

New approaches to target RNA binding proteins.

Ashley R Julio1, Keriann M Backus2.   

Abstract

RNA binding proteins (RBPs) are a large and diverse class of proteins that regulate all aspects of RNA biology. As RBP dysregulation has been implicated in a number of human disorders, including cancers and neurodegenerative disease, small molecule chemical probes that target individual RBPs represent useful tools for deciphering RBP function and guiding the production of new therapeutics. While RBPs are often thought of as tough-to-drug, the discovery of a number of small molecules that target RBPs has spurred considerable recent interest in new strategies for RBP chemical probe discovery. Here we review current and emerging technologies for high throughput RBP-small molecule screening that we expect will help unlock the full therapeutic potential of this exciting protein class.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Chemical probes; Chemoproteomics; High throughput screening (HTS); RNA binding proteins (RBPs)

Mesh:

Substances:

Year:  2021        PMID: 33535093      PMCID: PMC8823266          DOI: 10.1016/j.cbpa.2020.12.006

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  80 in total

1.  Small-molecule inhibition of the interaction between the translation initiation factors eIF4E and eIF4G.

Authors:  Nathan J Moerke; Huseyin Aktas; Han Chen; Sonia Cantel; Mikhail Y Reibarkh; Amr Fahmy; John D Gross; Alexei Degterev; Junying Yuan; Michael Chorev; Jose A Halperin; Gerhard Wagner
Journal:  Cell       Date:  2007-01-26       Impact factor: 41.582

2.  Discovery of spiro[indole-3,2'-pyrrolidin]-2(1H)-one based inhibitors targeting Brr2, a core component of the U5 snRNP.

Authors:  Masahiro Ito; Misa Iwatani; Takeshi Yamamoto; Toshio Tanaka; Tomohiro Kawamoto; Daisuke Morishita; Atsushi Nakanishi; Hironobu Maezaki
Journal:  Bioorg Med Chem       Date:  2017-07-13       Impact factor: 3.641

Review 3.  High-throughput approaches to profile RNA-protein interactions.

Authors:  Misha Nechay; Ralph E Kleiner
Journal:  Curr Opin Chem Biol       Date:  2019-12-06       Impact factor: 8.822

4.  An Activity-Guided Map of Electrophile-Cysteine Interactions in Primary Human T Cells.

Authors:  Ekaterina V Vinogradova; Xiaoyu Zhang; David Remillard; Daniel C Lazar; Radu M Suciu; Yujia Wang; Giulia Bianco; Yu Yamashita; Vincent M Crowley; Michael A Schafroth; Minoru Yokoyama; David B Konrad; Kenneth M Lum; Gabriel M Simon; Esther K Kemper; Michael R Lazear; Sifei Yin; Megan M Blewett; Melissa M Dix; Nhan Nguyen; Maxim N Shokhirev; Emily N Chin; Luke L Lairson; Bruno Melillo; Stuart L Schreiber; Stefano Forli; John R Teijaro; Benjamin F Cravatt
Journal:  Cell       Date:  2020-07-29       Impact factor: 41.582

5.  Discovery of a Small-Molecule Inhibitor of Protein-MicroRNA Interaction Using Binding Assay with a Site-Specifically Labeled Lin28.

Authors:  Donghyun Lim; Wan Gi Byun; Ja Young Koo; Hankum Park; Seung Bum Park
Journal:  J Am Chem Soc       Date:  2016-10-07       Impact factor: 15.419

6.  A 1536-well fluorescence polarization assay to screen for modulators of the MUSASHI family of RNA-binding proteins.

Authors:  Gerard Minuesa; Christophe Antczak; David Shum; Constantin Radu; Bhavneet Bhinder; Yueming Li; Hakim Djaballah; Michael G Kharas
Journal:  Comb Chem High Throughput Screen       Date:  2014       Impact factor: 1.339

7.  Small-molecule targeting of MUSASHI RNA-binding activity in acute myeloid leukemia.

Authors:  Gerard Minuesa; Steven K Albanese; Wei Xie; Yaniv Kazansky; Daniel Worroll; Arthur Chow; Alexandra Schurer; Sun-Mi Park; Christina Z Rotsides; James Taggart; Andrea Rizzi; Levi N Naden; Timothy Chou; Saroj Gourkanti; Daniel Cappel; Maria C Passarelli; Lauren Fairchild; Carolina Adura; J Fraser Glickman; Jessica Schulman; Christopher Famulare; Minal Patel; Joseph K Eibl; Gregory M Ross; Shibani Bhattacharya; Derek S Tan; Christina S Leslie; Thijs Beuming; Dinshaw J Patel; Yehuda Goldgur; John D Chodera; Michael G Kharas
Journal:  Nat Commun       Date:  2019-06-19       Impact factor: 14.919

8.  An optimized chemical-genetic method for cell-specific metabolic labeling of RNA.

Authors:  Sarah Nainar; Bonnie J Cuthbert; Nathan M Lim; Whitney E England; Ke Ke; Kanika Sophal; Robert Quechol; David L Mobley; Celia W Goulding; Robert C Spitale
Journal:  Nat Methods       Date:  2020-02-03       Impact factor: 28.547

Review 9.  Genetic mutations in RNA-binding proteins and their roles in ALS.

Authors:  Katannya Kapeli; Fernando J Martinez; Gene W Yeo
Journal:  Hum Genet       Date:  2017-07-31       Impact factor: 4.132

10.  Expansion of cat-ELCCA for the Discovery of Small Molecule Inhibitors of the Pre-let-7-Lin28 RNA-Protein Interaction.

Authors:  Daniel A Lorenz; Tanpreet Kaur; Samuel A Kerk; Erin E Gallagher; Jorge Sandoval; Amanda L Garner
Journal:  ACS Med Chem Lett       Date:  2018-05-16       Impact factor: 4.345

View more
  6 in total

Review 1.  Ubiquitination, Biotech Startups, and the Future of TRIM Family Proteins: A TRIM-Endous Opportunity.

Authors:  Utsa Bhaduri; Giuseppe Merla
Journal:  Cells       Date:  2021-04-25       Impact factor: 6.600

2.  Systematic Identification of the RNA-Binding Protein STAU2 as a Key Regulator of Pancreatic Adenocarcinoma.

Authors:  Xiao Wang; Wenbin Kuang; Jiayu Ding; Jiaxing Li; Minghui Ji; Weijiao Chen; Hao Shen; Zhongrui Shi; Dawei Wang; Liping Wang; Peng Yang
Journal:  Cancers (Basel)       Date:  2022-07-26       Impact factor: 6.575

Review 3.  Non-small molecule PROTACs (NSM-PROTACs): Protein degradation kaleidoscope.

Authors:  Sinan Ma; Jianai Ji; Yuanyuan Tong; Yuxuan Zhu; Junwei Dou; Xian Zhang; Shicheng Xu; Tianbao Zhu; Xiaoli Xu; Qidong You; Zhengyu Jiang
Journal:  Acta Pharm Sin B       Date:  2022-02-26       Impact factor: 14.903

Review 4.  Lin28 Regulates Cancer Cell Stemness for Tumour Progression.

Authors:  Zhuohui Lin; Mariia Radaeva; Artem Cherkasov; Xuesen Dong
Journal:  Cancers (Basel)       Date:  2022-09-24       Impact factor: 6.575

Review 5.  Musashi-1-A Stemness RBP for Cancer Therapy?

Authors:  Nadine Bley; Ali Hmedat; Simon Müller; Robin Rolnik; Alexander Rausch; Marcell Lederer; Stefan Hüttelmaier
Journal:  Biology (Basel)       Date:  2021-05-05

6.  RNA-binding proteins modulate drug sensitivity of cancer cells.

Authors:  Oliver Rogoyski; André P Gerber
Journal:  Emerg Top Life Sci       Date:  2021-11-12
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.