Literature DB >> 32950259

Serial Crystallography for Structure-Based Drug Discovery.

Lan Zhu1, Xiaoyu Chen1, Enrique E Abola1, Liang Jing1, Wei Liu2.   

Abstract

Rational drug discovery has greatly accelerated the development of safer and more efficacious therapeutics, assisted significantly by insights from experimentally determined 3D structures of ligands in complex with their targets. Serial crystallography (SX) with X-ray free-electron lasers has enabled structural determination using micrometer- or nanometer-size crystals. This technology, applied in the past decade to solve structures of notoriously difficult-to-study drug targets at room temperature, has now been adapted for use in synchrotron radiation facilities. Ultrashort time scales allow time-resolved characterization of dynamic structural changes and pave the road to study the molecular mechanisms by 'molecular movie.' This article summarizes the latest progress in SX technology and deliberates its demanding applications in future structure-based drug discovery.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Keywords:  GPCR ligand swapping; X-ray free-electron laser (XFEL); serial femtosecond crystallography; structure-based drug discovery (SBDD); synchrotron-based serial crystallography; time-resolved serial crystallography

Mesh:

Substances:

Year:  2020        PMID: 32950259      PMCID: PMC7572805          DOI: 10.1016/j.tips.2020.08.009

Source DB:  PubMed          Journal:  Trends Pharmacol Sci        ISSN: 0165-6147            Impact factor:   14.819


  71 in total

1.  Specific chemical and structural damage to proteins produced by synchrotron radiation.

Authors:  M Weik; R B Ravelli; G Kryger; S McSweeney; M L Raves; M Harel; P Gros; I Silman; J Kroon; J L Sussman
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

2.  Goniometer-based femtosecond crystallography with X-ray free electron lasers.

Authors:  Aina E Cohen; S Michael Soltis; Ana González; Laura Aguila; Roberto Alonso-Mori; Christopher O Barnes; Elizabeth L Baxter; Winnie Brehmer; Aaron S Brewster; Axel T Brunger; Guillermo Calero; Joseph F Chang; Matthieu Chollet; Paul Ehrensberger; Thomas L Eriksson; Yiping Feng; Johan Hattne; Britt Hedman; Michael Hollenbeck; James M Holton; Stephen Keable; Brian K Kobilka; Elena G Kovaleva; Andrew C Kruse; Henrik T Lemke; Guowu Lin; Artem Y Lyubimov; Aashish Manglik; Irimpan I Mathews; Scott E McPhillips; Silke Nelson; John W Peters; Nicholas K Sauter; Clyde A Smith; Jinhu Song; Hilary P Stevenson; Yingssu Tsai; Monarin Uervirojnangkoorn; Vladimir Vinetsky; Soichi Wakatsuki; William I Weis; Oleg A Zadvornyy; Oliver B Zeldin; Diling Zhu; Keith O Hodgson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-31       Impact factor: 11.205

3.  Room-temperature serial crystallography at synchrotron X-ray sources using slowly flowing free-standing high-viscosity microstreams.

Authors:  Sabine Botha; Karol Nass; Thomas R M Barends; Wolfgang Kabsch; Beatrice Latz; Florian Dworkowski; Lutz Foucar; Ezequiel Panepucci; Meitian Wang; Robert L Shoeman; Ilme Schlichting; R Bruce Doak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-23

4.  Current assessment of docking into GPCR crystal structures and homology models: successes, challenges, and guidelines.

Authors:  Thijs Beuming; Woody Sherman
Journal:  J Chem Inf Model       Date:  2012-11-15       Impact factor: 4.956

Review 5.  Structural genomics plucks high-hanging membrane proteins.

Authors:  Edda Kloppmann; Marco Punta; Burkhard Rost
Journal:  Curr Opin Struct Biol       Date:  2012-05-21       Impact factor: 6.809

6.  Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser.

Authors:  Christopher Kupitz; Shibom Basu; Ingo Grotjohann; Raimund Fromme; Nadia A Zatsepin; Kimberly N Rendek; Mark S Hunter; Robert L Shoeman; Thomas A White; Dingjie Wang; Daniel James; Jay-How Yang; Danielle E Cobb; Brenda Reeder; Raymond G Sierra; Haiguang Liu; Anton Barty; Andrew L Aquila; Daniel Deponte; Richard A Kirian; Sadia Bari; Jesse J Bergkamp; Kenneth R Beyerlein; Michael J Bogan; Carl Caleman; Tzu-Chiao Chao; Chelsie E Conrad; Katherine M Davis; Holger Fleckenstein; Lorenzo Galli; Stefan P Hau-Riege; Stephan Kassemeyer; Hartawan Laksmono; Mengning Liang; Lukas Lomb; Stefano Marchesini; Andrew V Martin; Marc Messerschmidt; Despina Milathianaki; Karol Nass; Alexandra Ros; Shatabdi Roy-Chowdhury; Kevin Schmidt; Marvin Seibert; Jan Steinbrener; Francesco Stellato; Lifen Yan; Chunhong Yoon; Thomas A Moore; Ana L Moore; Yulia Pushkar; Garth J Williams; Sébastien Boutet; R Bruce Doak; Uwe Weierstall; Matthias Frank; Henry N Chapman; John C H Spence; Petra Fromme
Journal:  Nature       Date:  2014-07-09       Impact factor: 49.962

Review 7.  Serial Femtosecond Crystallography of G Protein-Coupled Receptors.

Authors:  Benjamin Stauch; Vadim Cherezov
Journal:  Annu Rev Biophys       Date:  2018-03-15       Impact factor: 12.981

8.  X-ray lasers for structure and dynamics in biology.

Authors:  John C H Spence
Journal:  IUCrJ       Date:  2018-04-12       Impact factor: 4.769

9.  Toward G protein-coupled receptor structure-based drug design using X-ray lasers.

Authors:  Andrii Ishchenko; Benjamin Stauch; Gye Won Han; Alexander Batyuk; Anna Shiriaeva; Chufeng Li; Nadia Zatsepin; Uwe Weierstall; Wei Liu; Eriko Nango; Takanori Nakane; Rie Tanaka; Kensuke Tono; Yasumasa Joti; So Iwata; Isabel Moraes; Cornelius Gati; Vadim Cherezov
Journal:  IUCrJ       Date:  2019-10-24       Impact factor: 4.769

10.  Virtual discovery of melatonin receptor ligands to modulate circadian rhythms.

Authors:  Reed M Stein; Hye Jin Kang; John D McCorvy; Grant C Glatfelter; Anthony J Jones; Tao Che; Samuel Slocum; Xi-Ping Huang; Olena Savych; Yurii S Moroz; Benjamin Stauch; Linda C Johansson; Vadim Cherezov; Terry Kenakin; John J Irwin; Brian K Shoichet; Bryan L Roth; Margarita L Dubocovich
Journal:  Nature       Date:  2020-02-10       Impact factor: 49.962

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  1 in total

1.  Room-temperature serial synchrotron crystallography of Drosophila cryptochrome.

Authors:  Connor M Schneps; Abir Ganguly; Brian R Crane
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-07-27       Impact factor: 5.699

  1 in total

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