Literature DB >> 29507413

Dysregulation of the epigenetic landscape of normal aging in Alzheimer's disease.

Raffaella Nativio1, Greg Donahue1, Amit Berson2, Yemin Lan1, Alexandre Amlie-Wolf3, Ferit Tuzer4, Jon B Toledo3, Sager J Gosai2, Brian D Gregory2, Claudio Torres4, John Q Trojanowski3, Li-San Wang3, F Brad Johnson5, Nancy M Bonini6, Shelley L Berger7.   

Abstract

Aging is the strongest risk factor for Alzheimer's disease (AD), although the underlying mechanisms remain unclear. The chromatin state, in particular through the mark H4K16ac, has been implicated in aging and thus may play a pivotal role in age-associated neurodegeneration. Here we compare the genome-wide enrichment of H4K16ac in the lateral temporal lobe of AD individuals against both younger and elderly cognitively normal controls. We found that while normal aging leads to H4K16ac enrichment, AD entails dramatic losses of H4K16ac in the proximity of genes linked to aging and AD. Our analysis highlights the presence of three classes of AD-related changes with distinctive functional roles. Furthermore, we discovered an association between the genomic locations of significant H4K16ac changes with genetic variants identified in prior AD genome-wide association studies and with expression quantitative trait loci. Our results establish the basis for an epigenetic link between aging and AD.

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Year:  2018        PMID: 29507413      PMCID: PMC6124498          DOI: 10.1038/s41593-018-0101-9

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   24.884


  62 in total

1.  Developmental regulation and individual differences of neuronal H3K4me3 epigenomes in the prefrontal cortex.

Authors:  Iris Cheung; Hennady P Shulha; Yan Jiang; Anouch Matevossian; Jie Wang; Zhiping Weng; Schahram Akbarian
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

2.  Alzheimer's disease cerebrospinal fluid biomarker in cognitively normal subjects.

Authors:  Jon B Toledo; Henrik Zetterberg; Argonde C van Harten; Lidia Glodzik; Pablo Martinez-Lage; Luisella Bocchio-Chiavetto; Lorena Rami; Oskar Hansson; Reisa Sperling; Sebastiaan Engelborghs; Ricardo S Osorio; Hugo Vanderstichele; Manu Vandijck; Harald Hampel; Stefan Teipl; Abhay Moghekar; Marilyn Albert; William T Hu; Jose A Monge Argilés; Ana Gorostidi; Charlotte E Teunissen; Peter P De Deyn; Bradley T Hyman; Jose L Molinuevo; Giovanni B Frisoni; Gurutz Linazasoro; Mony J de Leon; Wiesje M van der Flier; Philip Scheltens; Kaj Blennow; Leslie M Shaw; John Q Trojanowski
Journal:  Brain       Date:  2015-07-27       Impact factor: 13.501

3.  Chromatin immunoprecipitation in postmortem brain.

Authors:  Hsien-Sung Huang; Anouch Matevossian; Yan Jiang; Schahram Akbarian
Journal:  J Neurosci Methods       Date:  2006-03-30       Impact factor: 2.390

4.  Effects of postmortem interval on biomolecule integrity in the brain.

Authors:  Corina Nagy; Marissa Maheu; Juan Pablo Lopez; Kathryn Vaillancourt; Cristiana Cruceanu; Jeffrey A Gross; Mitchell Arnovitz; Naguib Mechawar; Gustavo Turecki
Journal:  J Neuropathol Exp Neurol       Date:  2015-05       Impact factor: 3.685

Review 5.  Histone acetylation: molecular mnemonics on the chromatin.

Authors:  Johannes Gräff; Li-Huei Tsai
Journal:  Nat Rev Neurosci       Date:  2013-01-17       Impact factor: 34.870

6.  Histone methylation at gene promoters is associated with developmental regulation and region-specific expression of ionotropic and metabotropic glutamate receptors in human brain.

Authors:  Florian Stadler; Gabriele Kolb; Lothar Rubusch; Stephen P Baker; Edward G Jones; Schahram Akbarian
Journal:  J Neurochem       Date:  2005-07       Impact factor: 5.372

Review 7.  Epigenomics of Alzheimer's disease.

Authors:  David A Bennett; Lei Yu; Jingyun Yang; Gyan P Srivastava; Cristin Aubin; Philip L De Jager
Journal:  Transl Res       Date:  2014-05-16       Impact factor: 7.012

8.  Substance-specific and shared transcription and epigenetic changes in the human hippocampus chronically exposed to cocaine and alcohol.

Authors:  Zhifeng Zhou; Qiaoping Yuan; Deborah C Mash; David Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-04       Impact factor: 11.205

9.  SIRT6 links histone H3 lysine 9 deacetylation to NF-kappaB-dependent gene expression and organismal life span.

Authors:  Tiara L A Kawahara; Eriko Michishita; Adam S Adler; Mara Damian; Elisabeth Berber; Meihong Lin; Ron A McCord; Kristine C L Ongaigui; Lisa D Boxer; Howard Y Chang; Katrin F Chua
Journal:  Cell       Date:  2009-01-09       Impact factor: 41.582

Review 10.  Epigenetic Mechanisms of Longevity and Aging.

Authors:  Payel Sen; Parisha P Shah; Raffaella Nativio; Shelley L Berger
Journal:  Cell       Date:  2016-08-11       Impact factor: 41.582

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  88 in total

1.  Formaldehyde, Epigenetics, and Alzheimer's Disease.

Authors:  Fei Wang; Danqi Chen; Peipei Wu; Catherine Klein; Chunyuan Jin
Journal:  Chem Res Toxicol       Date:  2019-04-19       Impact factor: 3.739

Review 2.  Molecular Signatures of the Aging Brain: Finding the Links Between Genes and Phenotypes.

Authors:  Giuseppe Lupo; Silvana Gaetani; Emanuele Cacci; Stefano Biagioni; Rodolfo Negri
Journal:  Neurotherapeutics       Date:  2019-07       Impact factor: 7.620

Review 3.  Diverse and dynamic DNA modifications in brain and diseases.

Authors:  Matthew J Armstrong; Yulin Jin; Emily G Allen; Peng Jin
Journal:  Hum Mol Genet       Date:  2019-11-21       Impact factor: 6.150

4.  Alzheimer's Disease is Driven by Intraneuronally Retained Beta-Amyloid Produced in the AD-Specific, βAPP-Independent Pathway: Current Perspective and Experimental Models for Tomorrow.

Authors:  Vladimir Volloch; Bjorn Olsen; Sophia Rits
Journal:  Ann Integr Mol Med       Date:  2020

Review 5.  As time flies by: Investigating cardiac aging in the short-lived Drosophila model.

Authors:  Anna C Blice-Baum; Maria Clara Guida; Paul S Hartley; Peter D Adams; Rolf Bodmer; Anthony Cammarato
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2018-11-27       Impact factor: 5.187

6.  Precursor-Independent Overproduction of Beta-Amyloid in AD: Mitochondrial Dysfunction as Possible Initiator of Asymmetric RNA-Dependent βAPP mRNA Amplification. An Engine that Drives Alzheimer's Disease.

Authors:  Vladimir Volloch; Bjorn R Olsen; Sophia Rits
Journal:  Ann Integr Mol Med       Date:  2019-11-20

7.  Human endogenous retrovirus HERV-K(HML-2) RNA causes neurodegeneration through Toll-like receptors.

Authors:  Paul Dembny; Andrew G Newman; Manvendra Singh; Michael Hinz; Michal Szczepek; Christina Krüger; Robert Adalbert; Omar Dzaye; Thorsten Trimbuch; Thomas Wallach; Gunnar Kleinau; Katja Derkow; Bernhard C Richard; Carola Schipke; Claus Scheidereit; Harald Stachelscheid; Douglas Golenbock; Oliver Peters; Michael Coleman; Frank L Heppner; Patrick Scheerer; Victor Tarabykin; Klemens Ruprecht; Zsuzsanna Izsvák; Jens Mayer; Seija Lehnardt
Journal:  JCI Insight       Date:  2020-04-09

8.  Alzheimer disease: Epigenetics links ageing with Alzheimer disease.

Authors:  Ian Fyfe
Journal:  Nat Rev Neurol       Date:  2018-03-23       Impact factor: 42.937

9.  Telomere dysfunction cooperates with epigenetic alterations to impair murine embryonic stem cell fate commitment.

Authors:  Aditi Qamra; Tsz Wai Chu; Mélanie Criqui; Monika Sharma; Julissa Tsao; Danielle A Henry; Dalia Barsyte-Lovejoy; Cheryl H Arrowsmith; Neil Winegarden; Mathieu Lupien; Lea Harrington
Journal:  Elife       Date:  2020-04-16       Impact factor: 8.140

Review 10.  When function follows form: Nuclear compartment structure and the epigenetic landscape of the aging neuron.

Authors:  Johannes C M Schlachetzki; Tomohisa Toda; Jerome Mertens
Journal:  Exp Gerontol       Date:  2020-02-14       Impact factor: 4.032

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