Literature DB >> 25868148

Effects of postmortem interval on biomolecule integrity in the brain.

Corina Nagy1, Marissa Maheu, Juan Pablo Lopez, Kathryn Vaillancourt, Cristiana Cruceanu, Jeffrey A Gross, Mitchell Arnovitz, Naguib Mechawar, Gustavo Turecki.   

Abstract

Postmortem brain research is invaluable to the study of neurologic and neuropsychiatric disorders, including Alzheimer disease, schizophrenia, and major depression. A major confounder in molecular studies using human brain tissue is postmortem interval (i.e. the amount of time between a subject's death and processing of tissue). We examined the integrity of biomolecules that were of interest to molecular studies of neurologic disorders, including RNA, microRNA, histone modifications, and proteins, at various postmortem intervals in an animal model to assess their robustness and suitability for experimentation. Sprague-Dawley rats were selected as model and subjected to 2 conditions: a variable postmortem interval at room temperature and a fixed time of 24 hours at 4°C, which simulates the period commonly spent in the morgue before brain collection. Eight time points were investigated. MicroRNA was impressively resistant to postmortem intervals; methylated histone modifications showed a threshold between 72 and 96 hours, mirroring results from histone proteins at 72 hours. RNA degradation was transcript-specific, with housekeeping genes being more robust than genes with lower expression. Our results suggest that molecules commonly investigated in genetic and epigenetic studies were highly stable through the postmortem intervals investigated. These results support the continued use of postmortem tissue for neuropsychiatric research.

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Year:  2015        PMID: 25868148     DOI: 10.1097/NEN.0000000000000190

Source DB:  PubMed          Journal:  J Neuropathol Exp Neurol        ISSN: 0022-3069            Impact factor:   3.685


  17 in total

1.  Distribution of miRNA expression across human tissues.

Authors:  Nicole Ludwig; Petra Leidinger; Kurt Becker; Christina Backes; Tobias Fehlmann; Christian Pallasch; Steffi Rheinheimer; Benjamin Meder; Cord Stähler; Eckart Meese; Andreas Keller
Journal:  Nucleic Acids Res       Date:  2016-02-25       Impact factor: 16.971

2.  Characterization of RNA isolated from eighteen different human tissues: results from a rapid human autopsy program.

Authors:  Douglas G Walker; Alexis M Whetzel; Geidy Serrano; Lucia I Sue; Lih-Fen Lue; Thomas G Beach
Journal:  Cell Tissue Bank       Date:  2016-04-16       Impact factor: 1.522

3.  MicroRNA profile of human endo-/perilymph.

Authors:  Markus Rohde; Inga Sinicina; Anja Horn; Norbert Eichner; Gunter Meister; Michael Strupp; Susanne Himmelein
Journal:  J Neurol       Date:  2018-04-17       Impact factor: 4.849

4.  Dysregulation of the epigenetic landscape of normal aging in Alzheimer's disease.

Authors:  Raffaella Nativio; Greg Donahue; Amit Berson; Yemin Lan; Alexandre Amlie-Wolf; Ferit Tuzer; Jon B Toledo; Sager J Gosai; Brian D Gregory; Claudio Torres; John Q Trojanowski; Li-San Wang; F Brad Johnson; Nancy M Bonini; Shelley L Berger
Journal:  Nat Neurosci       Date:  2018-03-05       Impact factor: 24.884

5.  Alterations in the neuropeptide galanin system in major depressive disorder involve levels of transcripts, methylation, and peptide.

Authors:  Swapnali Barde; Joelle Rüegg; Josée Prud'homme; Tomas J Ekström; Miklos Palkovits; Gustavo Turecki; Gyorgy Bagdy; Robert Ihnatko; Elvar Theodorsson; Gabriella Juhasz; Rochellys Diaz-Heijtz; Naguib Mechawar; Tomas G M Hökfelt
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-09       Impact factor: 11.205

6.  Dissection of Human Retina and RPE-Choroid for Proteomic Analysis.

Authors:  Thiago Cabral; Marcus A Toral; Gabriel Velez; James E DiCarlo; Anuradha M Gore; MaryAnn Mahajan; Stephen H Tsang; Alexander G Bassuk; Vinit B Mahajan
Journal:  J Vis Exp       Date:  2017-11-12       Impact factor: 1.355

7.  Biomarker discovery: quantification of microRNAs and other small non-coding RNAs using next generation sequencing.

Authors:  Juan Pablo Lopez; Alpha Diallo; Cristiana Cruceanu; Laura M Fiori; Sylvie Laboissiere; Isabelle Guillet; Joelle Fontaine; Jiannis Ragoussis; Vladimir Benes; Gustavo Turecki; Carl Ernst
Journal:  BMC Med Genomics       Date:  2015-07-01       Impact factor: 3.063

8.  Bias in recent miRBase annotations potentially associated with RNA quality issues.

Authors:  Nicole Ludwig; Meike Becker; Timo Schumann; Timo Speer; Tobias Fehlmann; Andreas Keller; Eckart Meese
Journal:  Sci Rep       Date:  2017-07-12       Impact factor: 4.379

9.  Global and Site-Specific Changes in 5-Methylcytosine and 5-Hydroxymethylcytosine after Extended Post-mortem Interval.

Authors:  Jeffrey A Gross; Corina Nagy; Li Lin; Éric Bonneil; Marissa Maheu; Pierre Thibault; Naguib Mechawar; Peng Jin; Gustavo Turecki
Journal:  Front Genet       Date:  2016-06-23       Impact factor: 4.599

10.  Central role of the p53 pathway in the noncoding-RNA response to oxidative stress.

Authors:  Paola Fuschi; Matteo Carrara; Christine Voellenkle; Jose Manuel Garcia-Manteiga; Paolo Righini; Biagina Maimone; Elena Sangalli; Francesco Villa; Claudia Specchia; Mario Picozza; Giovanni Nano; Carlo Gaetano; Gaia Spinetti; Annibale A Puca; Alessandra Magenta; Fabio Martelli
Journal:  Aging (Albany NY)       Date:  2017-12-12       Impact factor: 5.682

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