Literature DB >> 29430375

Complete genome sequence of Bacillus velezensis 157 isolated from Eucommia ulmoides with pathogenic bacteria inhibiting and lignocellulolytic enzymes production by SSF.

Long Chen1, Wei Gu2, Hai-Yan Xu2, Gui-Lian Yang1,3,4, Xiao-Feng Shan1, Guang Chen5, Chun-Feng Wang1,3,4, Ai-Dong Qian1,3,4.   

Abstract

Bacillus velezensis 157 was isolated from the bark of Eucommia ulmoides, and exhibited antagonistic activity against a broad spectrum of pathogenic bacteria and fungi. Moreover, B. velezensis 157 also showed various lignocellulolytic activities including cellulase, xylanase, α-amylase, and pectinase, which had the ability of using the agro-industrial waste (soybean meal, wheat bran, sugarcane bagasse, wheat straw, rice husk, maize flour and maize straw) under solid-state fermentation and obtained several industrially valuable enzymes. Soybean meal appeared to be the most efficient substrate for the single fermentation of B. velezensis 157. Highest yield of pectinase (19.15 ± 2.66 U g-1), cellulase (46.69 ± 1.19 U g-1) and amylase (2097.18 ± 15.28 U g-1) was achieved on untreated soybean meal. Highest yield of xylanase (22.35 ± 2.24 U g-1) was obtained on untreated wheat bran. Here, we report the complete genome sequence of the B. velezensis 157, composed of a circular 4,013,317 bp chromosome with 3789 coding genes and a G + C content of 46.41%, one circular 8439 bp plasmid and a G + C content of 40.32%. The genome contained a total of 8 candidate gene clusters (bacillaene, difficidin, macrolactin, butirosin, bacillibactin, bacilysin, fengycin and surfactin), and dedicates over 15.8% of the whole genome to synthesize secondary metabolite biosynthesis. In addition, the genes encoding enzymes involved in degradation of cellulose, xylan, lignin, starch, mannan, galactoside and arabinan were found in the B. velezensis 157 genome. Thus, the study of B. velezensis 157 broadened that B. velezensis can not only be used as biocontrol agents, but also has potentially a wide range of applications in lignocellulosic biomass conversion.

Entities:  

Keywords:  Agro-industrial waste; Bacillus velezensis 157; Complete genome sequencing; Eucommia ulmoides; Lignocellulolytic enzyme activities; Secondary metabolites

Year:  2018        PMID: 29430375      PMCID: PMC5801104          DOI: 10.1007/s13205-018-1125-2

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  43 in total

1.  Clustering of highly homologous sequences to reduce the size of large protein databases.

Authors:  W Li; L Jaroszewski; A Godzik
Journal:  Bioinformatics       Date:  2001-03       Impact factor: 6.937

2.  Complete genome sequence of Serratia sp. YD25 (KCTC 42987) presenting strong antagonistic activities to various pathogenic fungi and bacteria.

Authors:  Chun Su; Yibo Liu; Yan Sun; Zhi Li
Journal:  J Biotechnol       Date:  2017-01-30       Impact factor: 3.307

3.  Assembling large genomes with single-molecule sequencing and locality-sensitive hashing.

Authors:  Konstantin Berlin; Sergey Koren; Chen-Shan Chin; James P Drake; Jane M Landolin; Adam M Phillippy
Journal:  Nat Biotechnol       Date:  2015-05-25       Impact factor: 54.908

Review 4.  Solid state fermentation (SSF): diversity of applications to valorize waste and biomass.

Authors:  M A Lizardi-Jiménez; R Hernández-Martínez
Journal:  3 Biotech       Date:  2017-04-25       Impact factor: 2.406

5.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

6.  Identification and characterization of Bacillus subtilis from grass carp (Ctenopharynodon idellus) for use as probiotic additives in aquatic feed.

Authors:  Xia Guo; Dan-Dan Chen; Kai-Song Peng; Zheng-Wei Cui; Xu-Jie Zhang; Shun Li; Yong-An Zhang
Journal:  Fish Shellfish Immunol       Date:  2016-03-15       Impact factor: 4.581

7.  A new family of glucose-1-phosphate/glucosamine-1-phosphate nucleotidylyltransferase in the biosynthetic pathways for antibiotics.

Authors:  Fumitaka Kudo; Kenichi Kawabe; Hisako Kuriki; Tadashi Eguchi; Katsumi Kakinuma
Journal:  J Am Chem Soc       Date:  2005-02-16       Impact factor: 15.419

8.  Bacterial volatiles induce systemic resistance in Arabidopsis.

Authors:  Choong-Min Ryu; Mohamed A Farag; Chia-Hui Hu; Munagala S Reddy; Joseph W Kloepper; Paul W Paré
Journal:  Plant Physiol       Date:  2004-02-19       Impact factor: 8.340

9.  Isolation, identification, and biocontrol of antagonistic bacterium against Botrytis cinerea after tomato harvest.

Authors:  Jun-Feng Shi; Chang-Qing Sun
Journal:  Braz J Microbiol       Date:  2017-06-03       Impact factor: 2.476

10.  Defining bacterial species in the genomic era: insights from the genus Acinetobacter.

Authors:  Jacqueline Z-M Chan; Mihail R Halachev; Nicholas J Loman; Chrystala Constantinidou; Mark J Pallen
Journal:  BMC Microbiol       Date:  2012-12-23       Impact factor: 3.605

View more
  16 in total

Review 1.  Biosynthesis and industrial applications of α-amylase: a review.

Authors:  Muhammad Adeel Farooq; Shaukat Ali; Ali Hassan; Hafiz Muhammad Tahir; Samaira Mumtaz; Shumaila Mumtaz
Journal:  Arch Microbiol       Date:  2021-01-22       Impact factor: 2.552

2.  Complete genome sequence of Bacillus velezensis ZY-1-1 reveals the genetic basis for its hemicellulosic/cellulosic substrate-inducible xylanase and cellulase activities.

Authors:  Zhen-Yu Zhang; Muhammad Fahim Raza; Ziqiang Zheng; Xuhao Zhang; Xinxin Dong; Hongyu Zhang
Journal:  3 Biotech       Date:  2018-10-31       Impact factor: 2.406

3.  Comparative genome analysis of Bacillus velezensis reveals a potential for degrading lignocellulosic biomass.

Authors:  Long Chen; Wei Gu; Hai-Yan Xu; Gui-Lian Yang; Xiao-Feng Shan; Guang Chen; Yuan-Huan Kang; Chun-Feng Wang; Ai-Dong Qian
Journal:  3 Biotech       Date:  2018-05-11       Impact factor: 2.406

4.  Genomic insights into biocontrol potential of Bacillus stercoris LJBS06.

Authors:  Bo Wang; Hang Peng; Wei Wu; Bohan Yang; Yuchen Chen; Fei Xu; Yachun Peng; Yuxuan Qin; Peining Fu; Jiang Lu
Journal:  3 Biotech       Date:  2021-10-09       Impact factor: 2.406

5.  Fermentation of NaHCO3-treated corn germ meal by Bacillus velezensis CL-4 promotes lignocellulose degradation and nutrient utilization.

Authors:  Long Chen; Wanying Chen; Boyu Zheng; Wei Yu; Lin Zheng; Zihui Qu; Xiaogang Yan; Bingdong Wei; Zijian Zhao
Journal:  Appl Microbiol Biotechnol       Date:  2022-08-17       Impact factor: 5.560

6.  Complete genome sequence and antimicrobial activity of Bacillus velezensis JT3-1, a microbial germicide isolated from yak feces.

Authors:  Youquan Li; Xuan Li; Dan Jia; Junlong Liu; Jinming Wang; Aihong Liu; Zhijie Liu; Guiquan Guan; Guangyuan Liu; Jianxun Luo; Hong Yin
Journal:  3 Biotech       Date:  2020-05-05       Impact factor: 2.406

7.  Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing.

Authors:  Marie-Alice Fraiture; Bert Bogaerts; Raf Winand; Marie Deckers; Nina Papazova; Kevin Vanneste; Sigrid C J De Keersmaecker; Nancy H C Roosens
Journal:  Sci Rep       Date:  2020-04-27       Impact factor: 4.379

8.  Genome sequencing of gut symbiotic Bacillus velezensis LC1 for bioethanol production from bamboo shoots.

Authors:  Yuanqiu Li; Lu Lei; Li Zheng; Ximeng Xiao; Hao Tang; Chaobing Luo
Journal:  Biotechnol Biofuels       Date:  2020-02-28       Impact factor: 6.040

9.  Novel research on nanocellulose production by a marine Bacillus velezensis strain SMR: a comparative study.

Authors:  Samia S Abouelkheir; Marwa S Kamara; Salma M Atia; Sara A Amer; Marina I Youssef; Rana S Abdelkawy; Sherine N Khattab; Soraya A Sabry
Journal:  Sci Rep       Date:  2020-08-26       Impact factor: 4.379

Review 10.  A Review on the Biotechnological Applications of the Operational Group Bacillus amyloliquefaciens.

Authors:  Mohamad Syazwan Ngalimat; Radin Shafierul Radin Yahaya; Mohamad Malik Al-Adil Baharudin; Syafiqah Mohd Yaminudin; Murni Karim; Siti Aqlima Ahmad; Suriana Sabri
Journal:  Microorganisms       Date:  2021-03-17
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.