Literature DB >> 30402367

Complete genome sequence of Bacillus velezensis ZY-1-1 reveals the genetic basis for its hemicellulosic/cellulosic substrate-inducible xylanase and cellulase activities.

Zhen-Yu Zhang1, Muhammad Fahim Raza1, Ziqiang Zheng1, Xuhao Zhang1, Xinxin Dong1, Hongyu Zhang1.   

Abstract

Bacillus velezensis ZY-1-1 was isolated from the larval gut of the lignocellulose-rich diet-fed scarab beetle, Holotrichia parallela, and confirmed to possess extremely high xylanase (48153.8 ± 412.1 U/L) and relatively moderate cellulase activity (610.1 ± 8.2 U/L). Notably, these xylanase and cellulase activities were enhanced by xylan (1.4 and 5.8-fold, respectively) and cellulose (1.1 and 3.5-fold, respectively), which indicated the hemicellulosic/cellulosic substrate-inducible lignocellulolytic activities of this strain. The complete genome of B. velezensis ZY-1-1 comprises of 3,899,251 bp in a circular chromosome with a G + C content of 46.6%. Among the predicted 3688 protein-coding genes, 24 genes are involved in the degradation of lignocellulose and other polysaccharides, including 8, 7 and 2 critical genes for the degradation of xylan, cellulose and lignin, respectively. This genome-based analysis will facilitate our understanding of the mechanism underlying the biodegradation of lignocellulose and the biotechnological application of this novel lignocellulolytic bacteria or related enzymes.

Entities:  

Keywords:  Bacillus velezensis; Cellulase; Complete genome; Substrate induction; Xylanase

Year:  2018        PMID: 30402367      PMCID: PMC6208453          DOI: 10.1007/s13205-018-1490-x

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  20 in total

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Authors:  Yuichi Hongoh
Journal:  Biosci Biotechnol Biochem       Date:  2010-06-07       Impact factor: 2.043

2.  Isolation, screening, and optimization of the fermentation conditions of highly cellulolytic bacteria from the hindgut of Holotrichia parallela larvae (Coleoptera: Scarabaeidae).

Authors:  Ping Sheng; Shengwei Huang; Qi Wang; Ailing Wang; Hongyu Zhang
Journal:  Appl Biochem Biotechnol       Date:  2012-04-28       Impact factor: 2.926

3.  Review of lignocellulolytic enzyme activity analyses and scale-down to microplate-based assays.

Authors:  A A Mansour; A Da Costa; T Arnaud; T A Lu-Chau; Maria Fdz-Polanco; M T Moreira; J A Cacho Rivero
Journal:  Talanta       Date:  2015-12-30       Impact factor: 6.057

4.  Autochthonous bacterial flora indicated by PCR-DGGE of 16S rRNA gene fragments from the alimentary tract of Costelytra zealandica (Coleoptera: Scarabaeidae).

Authors:  H Zhang; T A Jackson
Journal:  J Appl Microbiol       Date:  2008-08-18       Impact factor: 3.772

5.  Complete genome sequence of Bacillus sp. 275, producing extracellular cellulolytic, xylanolytic and ligninolytic enzymes.

Authors:  Gyeongtaek Gong; Seil Kim; Sun-Mi Lee; Han Min Woo; Tai Hyun Park; Youngsoon Um
Journal:  J Biotechnol       Date:  2017-05-31       Impact factor: 3.307

6.  Enzyme-based lignocellulose hydrolyzation--Sauter mean diameter of raw materials as a basis for cellulase performance characterization and yield prediction.

Authors:  Robert Glaser
Journal:  J Biotechnol       Date:  2015-09-14       Impact factor: 3.307

Review 7.  Bacterial enzymes involved in lignin degradation.

Authors:  Gonzalo de Gonzalo; Dana I Colpa; Mohamed H M Habib; Marco W Fraaije
Journal:  J Biotechnol       Date:  2016-08-17       Impact factor: 3.307

8.  Polyphenols content of spent coffee grounds subjected to physico-chemical pretreatments influences lignocellulolytic enzymes production by Bacillus sp. R2.

Authors:  Omar Khelil; Slimane Choubane; Ben Amar Cheba
Journal:  Bioresour Technol       Date:  2016-03-22       Impact factor: 9.642

9.  Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.

Authors:  Bruce J Walker; Thomas Abeel; Terrance Shea; Margaret Priest; Amr Abouelliel; Sharadha Sakthikumar; Christina A Cuomo; Qiandong Zeng; Jennifer Wortman; Sarah K Young; Ashlee M Earl
Journal:  PLoS One       Date:  2014-11-19       Impact factor: 3.240

10.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

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  6 in total

1.  Hemicellulosic biomass conversion by Moroccan hot spring Bacillus paralicheniformis CCMM B940 evidenced by glycoside hydrolase activities and whole genome sequencing.

Authors:  Soufiane Maski; Serigne Inssa Ngom; Bahia Rached; Taha Chouati; Mohamed Benabdelkhalek; Elmostafa El Fahime; Mohamed Amar; Christel Béra-Maillet
Journal:  3 Biotech       Date:  2021-07-22       Impact factor: 2.406

2.  Fermentation of NaHCO3-treated corn germ meal by Bacillus velezensis CL-4 promotes lignocellulose degradation and nutrient utilization.

Authors:  Long Chen; Wanying Chen; Boyu Zheng; Wei Yu; Lin Zheng; Zihui Qu; Xiaogang Yan; Bingdong Wei; Zijian Zhao
Journal:  Appl Microbiol Biotechnol       Date:  2022-08-17       Impact factor: 5.560

3.  Complete genome sequence and antimicrobial activity of Bacillus velezensis JT3-1, a microbial germicide isolated from yak feces.

Authors:  Youquan Li; Xuan Li; Dan Jia; Junlong Liu; Jinming Wang; Aihong Liu; Zhijie Liu; Guiquan Guan; Guangyuan Liu; Jianxun Luo; Hong Yin
Journal:  3 Biotech       Date:  2020-05-05       Impact factor: 2.406

4.  Nutritional quality improvement of soybean meal by Bacillus velezensis and Lactobacillus plantarum during two-stage solid- state fermentation.

Authors:  Long Chen; Zijian Zhao; Wei Yu; Lin Zheng; Lijia Li; Wei Gu; Haiyan Xu; Bingdong Wei; Xiaogang Yan
Journal:  AMB Express       Date:  2021-02-05       Impact factor: 3.298

5.  Genome sequencing of gut symbiotic Bacillus velezensis LC1 for bioethanol production from bamboo shoots.

Authors:  Yuanqiu Li; Lu Lei; Li Zheng; Ximeng Xiao; Hao Tang; Chaobing Luo
Journal:  Biotechnol Biofuels       Date:  2020-02-28       Impact factor: 6.040

Review 6.  A Review on Bacterial Contribution to Lignocellulose Breakdown into Useful Bio-Products.

Authors:  Ogechukwu Bose Chukwuma; Mohd Rafatullah; Husnul Azan Tajarudin; Norli Ismail
Journal:  Int J Environ Res Public Health       Date:  2021-06-03       Impact factor: 3.390

  6 in total

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