Literature DB >> 29411211

"Bridge to the Literature"? Third-Party Genetic Interpretation Tools and the Views of Tool Developers.

Sarah C Nelson1, Stephanie M Fullerton2.   

Abstract

Patients and health care consumers can obtain access to their "raw," or uninterpreted, genetic data from direct-to-consumer genetic testing companies, researchers, or providers and pursue self-directed analysis via third-party interpretation tools. Yet relatively little is known about the nature of currently available interpretation tools or the motivations of tool developers. We conducted a structured content analysis of 23 third-party interpretation tool websites and supporting information, tracking features such as types of information returned, modes of generating and presenting that information, and privacy and security measures. We additionally conducted qualitative interviews with a subset of 10 tool developers. A majority of tools (16 of 23, or 70%) offer some type of health or wellness-related information, often extracted from publicly available variant annotation databases. Half of those interviewed characterized their activities as "bridging" users to the scientific literature rather than interpretation, for which they gave a variety of scientific, ethical, and regulatory justifications. The scale, heterogeneity, and complexity of information available from third-party interpretation are unprecedented. While developers aim to enlighten and empower tool users, interpretation-free "bridging" to rapidly evolving databases may instead impose burdens on genetic counselors and other health care providers asked to provide further contextualization and explanation.

Entities:  

Keywords:  Direct-to-consumer genomic testing; Personal genomic testing; Third-party interpretation; Variant interpretation

Mesh:

Year:  2018        PMID: 29411211     DOI: 10.1007/s10897-018-0217-9

Source DB:  PubMed          Journal:  J Genet Couns        ISSN: 1059-7700            Impact factor:   2.537


  26 in total

1.  dbSNP: the NCBI database of genetic variation.

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Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  In need of a reality check.

Authors:  Steven Murphy
Journal:  Nat Biotechnol       Date:  2009-05       Impact factor: 54.908

3.  Geneticists should offer data to participants.

Authors:  Sarah Nelson
Journal:  Nature       Date:  2016-11-03       Impact factor: 49.962

Review 4.  Ancestry Testing and the Practice of Genetic Counseling.

Authors:  Brianne E Kirkpatrick; Misha D Rashkin
Journal:  J Genet Couns       Date:  2016-10-04       Impact factor: 2.537

5.  Consumer Perceptions of Interactions With Primary Care Providers After Direct-to-Consumer Personal Genomic Testing.

Authors:  Cathelijne H van der Wouden; Deanna Alexis Carere; Anke H Maitland-van der Zee; Mack T Ruffin; J Scott Roberts; Robert C Green
Journal:  Ann Intern Med       Date:  2016-03-01       Impact factor: 25.391

6.  Educational needs of primary care physicians regarding direct-to-consumer genetic testing.

Authors:  Karen P Powell; Carol A Christianson; Whitney A Cogswell; Gaurav Dave; Amit Verma; Sonja Eubanks; Vincent C Henrich
Journal:  J Genet Couns       Date:  2011-12-30       Impact factor: 2.537

7.  Interpretome: a freely available, modular, and secure personal genome interpretation engine.

Authors:  Konrad J Karczewski; Robert P Tirrell; Pablo Cordero; Nicholas P Tatonetti; Joel T Dudley; Keyan Salari; Michael Snyder; Russ B Altman; Stuart K Kim
Journal:  Pac Symp Biocomput       Date:  2012

8.  The on-line promotion and sale of nutrigenomic services.

Authors:  Rene Sterling
Journal:  Genet Med       Date:  2008-11       Impact factor: 8.822

9.  Regulatory changes raise troubling questions for genomic testing.

Authors:  Barbara J Evans; Michael O Dorschner; Wylie Burke; Gail P Jarvik
Journal:  Genet Med       Date:  2014-09-25       Impact factor: 8.822

10.  The NHGRI GWAS Catalog, a curated resource of SNP-trait associations.

Authors:  Danielle Welter; Jacqueline MacArthur; Joannella Morales; Tony Burdett; Peggy Hall; Heather Junkins; Alan Klemm; Paul Flicek; Teri Manolio; Lucia Hindorff; Helen Parkinson
Journal:  Nucleic Acids Res       Date:  2013-12-06       Impact factor: 16.971

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  7 in total

1.  Third-Party Genetic Interpretation Tools: A Mixed-Methods Study of Consumer Motivation and Behavior.

Authors:  Sarah C Nelson; Deborah J Bowen; Stephanie M Fullerton
Journal:  Am J Hum Genet       Date:  2019-06-13       Impact factor: 11.025

2.  Core values of genomic citizen science: results from a qualitative interview study.

Authors:  Christi J Guerrini; Meredith Trejo; Isabel Canfield; Amy L McGuire
Journal:  Biosocieties       Date:  2020-09-28

3.  PAGEANT: personal access to genome and analysis of natural traits.

Authors:  Jie Huang; Zhi-Sheng Liang; Stefano Pallotti; Janice M Ranson; David J Llewellyn; Zhi-Jie Zheng; Daniel A King; Qiang Zhou; Houfeng Zheng; Valerio Napolioni
Journal:  Nucleic Acids Res       Date:  2022-04-22       Impact factor: 16.971

4.  Genetic database software as medical devices.

Authors:  Adrian Thorogood; Seydina B Touré; Johan Ordish; Alison Hall; Bartha Knoppers
Journal:  Hum Mutat       Date:  2018-11       Impact factor: 4.878

5.  MySeq: privacy-protecting browser-based personal Genome analysis for genomics education and exploration.

Authors:  Michael D Linderman; Leo McElroy; Laura Chang
Journal:  BMC Med Genomics       Date:  2019-11-27       Impact factor: 3.063

6.  Should police have access to genetic genealogy databases? Capturing the Golden State Killer and other criminals using a controversial new forensic technique.

Authors:  Christi J Guerrini; Jill O Robinson; Devan Petersen; Amy L McGuire
Journal:  PLoS Biol       Date:  2018-10-02       Impact factor: 8.029

7.  Donors, authors, and owners: how is genomic citizen science addressing interests in research outputs?

Authors:  Christi J Guerrini; Meaganne Lewellyn; Mary A Majumder; Meredith Trejo; Isabel Canfield; Amy L McGuire
Journal:  BMC Med Ethics       Date:  2019-11-21       Impact factor: 2.652

  7 in total

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