Literature DB >> 29359747

Phosphorylation, oligomerization and self-assembly in water under potential prebiotic conditions.

Clémentine Gibard1, Subhendu Bhowmik1, Megha Karki1, Eun-Kyong Kim1, Ramanarayanan Krishnamurthy1.   

Abstract

Prebiotic phosphorylation of (pre)biological substrates under aqueous conditions is a critical step in the origins of life. Previous investigations have had limited success and/or require unique environments that are incompatible with subsequent generation of the corresponding oligomers or higher-order structures. Here, we demonstrate that diamidophosphate (DAP)-a plausible prebiotic agent produced from trimetaphosphate-efficiently (amido)phosphorylates a wide variety of (pre)biological building blocks (nucleosides/tides, amino acids and lipid precursors) under aqueous (solution/paste) conditions, without the need for a condensing agent. Significantly, higher-order structures (oligonucleotides, peptides and liposomes) are formed under the same phosphorylation reaction conditions. This plausible prebiotic phosphorylation process under similar reaction conditions could enable the systems chemistry of the three classes of (pre)biologically relevant molecules and their oligomers, in a single-pot aqueous environment.

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Year:  2017        PMID: 29359747      PMCID: PMC6295206          DOI: 10.1038/nchem.2878

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  30 in total

1.  Direct evidence for the availability of reactive, water soluble phosphorus on the early Earth. H-phosphinic acid from the Nantan meteorite.

Authors:  David E Bryant; Terence P Kee
Journal:  Chem Commun (Camb)       Date:  2006-05-05       Impact factor: 6.222

2.  The effect of leaving groups on binding and reactivity in enzyme-free copying of DNA and RNA.

Authors:  Eric Kervio; Marilyne Sosson; Clemens Richert
Journal:  Nucleic Acids Res       Date:  2016-05-27       Impact factor: 16.971

3.  Prebiotic phosphorylation of thymidine at 65 degrees C in simulated desert conditions.

Authors:  M J Bishop; R Lohrmann; L E Orgel
Journal:  Nature       Date:  1972-05-19       Impact factor: 49.962

4.  Prebiotic synthesis of phosphoenol pyruvate by α-phosphorylation-controlled triose glycolysis.

Authors:  Adam J Coggins; Matthew W Powner
Journal:  Nat Chem       Date:  2016-10-10       Impact factor: 24.427

5.  Detection of interstellar PN: the first phosphorus-bearing species observed in molecular clouds.

Authors:  L M Ziurys
Journal:  Astrophys J       Date:  1987-10-01       Impact factor: 5.874

6.  Evaporite Borate-Containing Mineral Ensembles Make Phosphate Available and Regiospecifically Phosphorylate Ribonucleosides: Borate as a Multifaceted Problem Solver in Prebiotic Chemistry.

Authors:  Hyo-Joong Kim; Yoshihiro Furukawa; Takeshi Kakegawa; Andrei Bita; Romulus Scorei; Steven A Benner
Journal:  Angew Chem Int Ed Engl       Date:  2016-11-09       Impact factor: 15.336

7.  Prebiotic phosphorylation of nucleosides in formamide.

Authors:  A M Schoffstall
Journal:  Orig Life       Date:  1976-12

8.  Aqueous corrosion of phosphide minerals from iron meteorites: a highly reactive source of prebiotic phosphorus on the surface of the early Earth.

Authors:  Matthew A Pasek; Dante S Lauretta
Journal:  Astrobiology       Date:  2005-08       Impact factor: 4.335

9.  Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.

Authors:  Matthew W Powner; Béatrice Gerland; John D Sutherland
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

Review 10.  Nitrogenous Derivatives of Phosphorus and the Origins of Life: Plausible Prebiotic Phosphorylating Agents in Water.

Authors:  Megha Karki; Clémentine Gibard; Subhendu Bhowmik; Ramanarayanan Krishnamurthy
Journal:  Life (Basel)       Date:  2017-07-29
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  42 in total

1.  Primitive selection of the fittest emerging through functional synergy in nucleopeptide networks.

Authors:  Anil Kumar Bandela; Nathaniel Wagner; Hava Sadihov; Sara Morales-Reina; Agata Chotera-Ouda; Kingshuk Basu; Rivka Cohen-Luria; Andrés de la Escosura; Gonen Ashkenasy
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-02       Impact factor: 11.205

2.  Mineral surfaces select for longer RNA molecules.

Authors:  Ryo Mizuuchi; Alex Blokhuis; Lena Vincent; Philippe Nghe; Niles Lehman; David Baum
Journal:  Chem Commun (Camb)       Date:  2019-02-12       Impact factor: 6.222

3.  Trimetaphosphate Activates Prebiotic Peptide Synthesis across a Wide Range of Temperature and pH.

Authors:  Izabela Sibilska; Yu Feng; Lingjun Li; John Yin
Journal:  Orig Life Evol Biosph       Date:  2018-09-29       Impact factor: 1.950

4.  Reentrant Phase Transitions and Non-Equilibrium Dynamics in Membraneless Organelles.

Authors:  Anthony N Milin; Ashok A Deniz
Journal:  Biochemistry       Date:  2018-04-03       Impact factor: 3.162

5.  Prebiotic synthesis of α-amino acids and orotate from α-ketoacids potentiates transition to extant metabolic pathways.

Authors:  Sunil Pulletikurti; Mahipal Yadav; Greg Springsteen; Ramanarayanan Krishnamurthy
Journal:  Nat Chem       Date:  2022-07-28       Impact factor: 24.274

6.  Prebiotic synthesis and triphosphorylation of 3'-amino-TNA nucleosides.

Authors:  Daniel Whitaker; Matthew W Powner
Journal:  Nat Chem       Date:  2022-07-01       Impact factor: 24.274

7.  A prebiotic basis for ATP as the universal energy currency.

Authors:  Silvana Pinna; Cäcilia Kunz; Aaron Halpern; Stuart A Harrison; Sean F Jordan; John Ward; Finn Werner; Nick Lane
Journal:  PLoS Biol       Date:  2022-10-04       Impact factor: 9.593

8.  Prebiotic phosphorylation of 2-thiouridine provides either nucleotides or DNA building blocks via photoreduction.

Authors:  Jianfeng Xu; Nicholas J Green; Clémentine Gibard; Ramanarayanan Krishnamurthy; John D Sutherland
Journal:  Nat Chem       Date:  2019-04-01       Impact factor: 24.427

9.  Polyanion-Assisted Ribozyme Catalysis Inside Complex Coacervates.

Authors:  Raghav R Poudyal; Christine D Keating; Philip C Bevilacqua
Journal:  ACS Chem Biol       Date:  2019-06-07       Impact factor: 5.100

10.  Harnessing chemical energy for the activation and joining of prebiotic building blocks.

Authors:  Ziwei Liu; Long-Fei Wu; Jianfeng Xu; Claudia Bonfio; David A Russell; John D Sutherland
Journal:  Nat Chem       Date:  2020-10-22       Impact factor: 24.427

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