Literature DB >> 30936523

Prebiotic phosphorylation of 2-thiouridine provides either nucleotides or DNA building blocks via photoreduction.

Jianfeng Xu1, Nicholas J Green1, Clémentine Gibard2, Ramanarayanan Krishnamurthy3, John D Sutherland4.   

Abstract

Breakthroughs in the study of the origin of life have demonstrated how some of the building blocks essential to biology could have been formed under various primordial scenarios, and could therefore have contributed to the chemical evolution of life. Missing building blocks are then sometimes inferred to be products of primitive biosynthesis, which can stretch the limits of plausibility. Here, we demonstrate the synthesis of 2'-deoxy-2-thiouridine, and subsequently 2'-deoxyadenosine and 2-deoxyribose, under prebiotic conditions. 2'-Deoxy-2-thiouridine is produced by photoreduction of 2,2'-anhydro-2-thiouridine, which is in turn formed by phosphorylation of 2-thiouridine-an intermediate of prebiotic RNA synthesis. 2'-Deoxy-2-thiouridine is an effective deoxyribosylating agent and may have functioned as such in either abiotic or proto-enzyme-catalysed pathways to DNA, as demonstrated by its conversion to 2'-deoxyadenosine by reaction with adenine, and 2-deoxyribose by hydrolysis. An alternative prebiotic phosphorylation of 2-thiouridine leads to the formation of its 5'-phosphate, showing that hypotheses in which 2-thiouridine was a key component of early RNA sequences are within the bounds of synthetic credibility.

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Year:  2019        PMID: 30936523      PMCID: PMC6597365          DOI: 10.1038/s41557-019-0225-x

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  25 in total

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Authors:  M S Verlander; R Lohrmann; L E Orgel
Journal:  J Mol Evol       Date:  1973-11-27       Impact factor: 2.395

2.  Thionucleotides in the transfer ribonucleic acids of Pseudomonas aeruginosa and Escherichia coli.

Authors:  Y S Rao; B Thimmappayya; J D Cherayil
Journal:  Biochem J       Date:  1972-06       Impact factor: 3.857

3.  Urea-inorganic phosphate mixtures as prebiotic phosphorylating agents.

Authors:  R Lohrmann; L E Orgel
Journal:  Science       Date:  1971-02-05       Impact factor: 47.728

4.  Prebiotic synthesis of simple sugars by photoredox systems chemistry.

Authors:  Dougal Ritson; John D Sutherland
Journal:  Nat Chem       Date:  2012-09-30       Impact factor: 24.427

5.  Common origins of RNA, protein and lipid precursors in a cyanosulfidic protometabolism.

Authors:  Bhavesh H Patel; Claudia Percivalle; Dougal J Ritson; Colm D Duffy; John D Sutherland
Journal:  Nat Chem       Date:  2015-03-16       Impact factor: 24.427

6.  Enhanced Nonenzymatic RNA Copying with 2-Aminoimidazole Activated Nucleotides.

Authors:  Li Li; Noam Prywes; Chun Pong Tam; Derek K O'Flaherty; Victor S Lelyveld; Enver Cagri Izgu; Ayan Pal; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2017-01-24       Impact factor: 15.419

7.  Multicomponent assembly of proposed DNA precursors in water.

Authors:  Matthew W Powner; Shao-Liang Zheng; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2012-08-09       Impact factor: 15.419

8.  Conversion of biosynthetic precursors of RNA to those of DNA by photoredox chemistry.

Authors:  Dougal J Ritson; John D Sutherland
Journal:  J Mol Evol       Date:  2014-04-16       Impact factor: 2.395

9.  Synthesis of aldehydic ribonucleotide and amino acid precursors by photoredox chemistry.

Authors:  Dougal J Ritson; John D Sutherland
Journal:  Angew Chem Int Ed Engl       Date:  2013-04-22       Impact factor: 15.336

10.  The origin of RNA precursors on exoplanets.

Authors:  Paul B Rimmer; Jianfeng Xu; Samantha J Thompson; Ed Gillen; John D Sutherland; Didier Queloz
Journal:  Sci Adv       Date:  2018-08-01       Impact factor: 14.136

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  15 in total

1.  Selective prebiotic formation of RNA pyrimidine and DNA purine nucleosides.

Authors:  Jianfeng Xu; Václav Chmela; Nicholas J Green; David A Russell; Mikołaj J Janicki; Robert W Góra; Rafał Szabla; Andrew D Bond; John D Sutherland
Journal:  Nature       Date:  2020-06-03       Impact factor: 49.962

2.  2,6-diaminopurine promotes repair of DNA lesions under prebiotic conditions.

Authors:  Rafał Szabla; Magdalena Zdrowowicz; Paulina Spisz; Nicholas J Green; Petr Stadlbauer; Holger Kruse; Jiří Šponer; Janusz Rak
Journal:  Nat Commun       Date:  2021-05-21       Impact factor: 17.694

3.  Equilibrium and non-equilibrium furanose selection in the ribose isomerisation network.

Authors:  Avinash Vicholous Dass; Thomas Georgelin; Frances Westall; Frédéric Foucher; Paolo De Los Rios; Daniel Maria Busiello; Shiling Liang; Francesco Piazza
Journal:  Nat Commun       Date:  2021-05-12       Impact factor: 14.919

4.  Radicals in Biology: Your Life Is in Their Hands.

Authors:  JoAnne Stubbe; Daniel G Nocera
Journal:  J Am Chem Soc       Date:  2021-08-23       Impact factor: 15.419

5.  Prebiotic Route to Thymine from Formamide-A Combined Experimental-Theoretical Study.

Authors:  Lukáš Petera; Klaudia Mrazikova; Lukas Nejdl; Kristyna Zemankova; Marketa Vaculovicova; Adam Pastorek; Svatopluk Civis; Petr Kubelik; Alan Heays; Giuseppe Cassone; Jiri Sponer; Martin Ferus; Judit Sponer
Journal:  Molecules       Date:  2021-04-13       Impact factor: 4.927

Review 6.  Illuminating Life's Origins: UV Photochemistry in Abiotic Synthesis of Biomolecules.

Authors:  Nicholas J Green; Jianfeng Xu; John D Sutherland
Journal:  J Am Chem Soc       Date:  2021-04-21       Impact factor: 15.419

7.  The role of sugar-backbone heterogeneity and chimeras in the simultaneous emergence of RNA and DNA.

Authors:  Subhendu Bhowmik; Ramanarayanan Krishnamurthy
Journal:  Nat Chem       Date:  2019-09-16       Impact factor: 24.427

Review 8.  Prebiotic Nucleoside Synthesis: The Selectivity of Simplicity.

Authors:  Florian M Kruse; Jennifer S Teichert; Oliver Trapp
Journal:  Chemistry       Date:  2020-09-17       Impact factor: 5.020

9.  A Model for the Emergence of RNA from a Prebiotically Plausible Mixture of Ribonucleotides, Arabinonucleotides, and 2'-Deoxynucleotides.

Authors:  Seohyun Chris Kim; Lijun Zhou; Wen Zhang; Derek K O'Flaherty; Valeria Rondo-Brovetto; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2020-01-22       Impact factor: 16.383

10.  Photoredox chemistry in the synthesis of 2-aminoazoles implicated in prebiotic nucleic acid synthesis.

Authors:  Ziwei Liu; Long-Fei Wu; Andrew D Bond; John D Sutherland
Journal:  Chem Commun (Camb)       Date:  2020-10-14       Impact factor: 6.222

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