Literature DB >> 33622789

Primitive selection of the fittest emerging through functional synergy in nucleopeptide networks.

Anil Kumar Bandela1, Nathaniel Wagner1, Hava Sadihov1, Sara Morales-Reina2, Agata Chotera-Ouda1, Kingshuk Basu1, Rivka Cohen-Luria1, Andrés de la Escosura3,4, Gonen Ashkenasy5.   

Abstract

Many fundamental cellular and viral functions, including replication and translation, involve complex ensembles hosting synergistic activity between nucleic acids and proteins/peptides. There is ample evidence indicating that the chemical precursors of both nucleic acids and peptides could be efficiently formed in the prebiotic environment. Yet, studies on nonenzymatic replication, a central mechanism driving early chemical evolution, have focused largely on the activity of each class of these molecules separately. We show here that short nucleopeptide chimeras can replicate through autocatalytic and cross-catalytic processes, governed synergistically by the hybridization of the nucleobase motifs and the assembly propensity of the peptide segments. Unequal assembly-dependent replication induces clear selectivity toward the formation of a certain species within small networks of complementary nucleopeptides. The selectivity pattern may be influenced and indeed maximized to the point of almost extinction of the weakest replicator when the system is studied far from equilibrium and manipulated through changes in the physical (flow) and chemical (template and inhibition) conditions. We postulate that similar processes may have led to the emergence of the first functional nucleic-acid-peptide assemblies prior to the origin of life. Furthermore, spontaneous formation of related replicating complexes could potentially mark the initiation point for information transfer and rapid progression in complexity within primitive environments, which would have facilitated the development of a variety of functions found in extant biological assemblies.

Entities:  

Keywords:  chemical evolution; molecular networks; nucleic-acid–peptide conjugates; self-replication

Year:  2021        PMID: 33622789      PMCID: PMC7936268          DOI: 10.1073/pnas.2015285118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  66 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-26       Impact factor: 11.205

2.  Compositional Persistence in a Multicyclic Network of Synthetic Replicators.

Authors:  Jürgen Huck; Tamara Kosikova; Douglas Philp
Journal:  J Am Chem Soc       Date:  2019-08-26       Impact factor: 15.419

Review 3.  Achieving biopolymer synergy in systems chemistry.

Authors:  Yushi Bai; Agata Chotera; Olga Taran; Chen Liang; Gonen Ashkenasy; David G Lynn
Journal:  Chem Soc Rev       Date:  2018-07-17       Impact factor: 54.564

4.  Diversification of self-replicating molecules.

Authors:  Jan W Sadownik; Elio Mattia; Piotr Nowak; Sijbren Otto
Journal:  Nat Chem       Date:  2016-01-04       Impact factor: 24.427

5.  Infrared demonstration of hydrogen bonding between purine and pyrimidine base analogues in solution.

Authors:  J H Miller; H M Sobell
Journal:  J Mol Biol       Date:  1967-03-14       Impact factor: 5.469

6.  Base pairing and mutagenesis: observation of a protonated base pair between 2-aminopurine and cytosine in an oligonucleotide by proton NMR.

Authors:  L C Sowers; G V Fazakerley; R Eritja; B E Kaplan; M F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1986-08       Impact factor: 11.205

7.  Two Synthetic Replicators Compete To Process a Dynamic Reagent Pool.

Authors:  Tamara Kosikova; Douglas Philp
Journal:  J Am Chem Soc       Date:  2019-02-08       Impact factor: 15.419

8.  Ester-Mediated Amide Bond Formation Driven by Wet-Dry Cycles: A Possible Path to Polypeptides on the Prebiotic Earth.

Authors:  Jay G Forsythe; Sheng-Sheng Yu; Irena Mamajanov; Martha A Grover; Ramanarayanan Krishnamurthy; Facundo M Fernández; Nicholas V Hud
Journal:  Angew Chem Int Ed Engl       Date:  2015-07-15       Impact factor: 15.336

9.  Mutually stabilizing interactions between proto-peptides and RNA.

Authors:  Moran Frenkel-Pinter; Jay W Haynes; Ahmad M Mohyeldin; Martin C; Alyssa B Sargon; Anton S Petrov; Ramanarayanan Krishnamurthy; Nicholas V Hud; Loren Dean Williams; Luke J Leman
Journal:  Nat Commun       Date:  2020-06-19       Impact factor: 14.919

10.  Selection from a pool of self-assembling lipid replicators.

Authors:  Ignacio Colomer; Arseni Borissov; Stephen P Fletcher
Journal:  Nat Commun       Date:  2020-01-10       Impact factor: 14.919

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  5 in total

1.  An Approach to the De Novo Synthesis of Life.

Authors:  Sijbren Otto
Journal:  Acc Chem Res       Date:  2021-12-29       Impact factor: 22.384

2.  An Optical Probe for Real-Time Monitoring of Self-Replicator Emergence and Distinguishing between Replicators.

Authors:  Joydev Hatai; Yigit Altay; Ankush Sood; Armin Kiani; Marcel J Eleveld; Leila Motiei; David Margulies; Sijbren Otto
Journal:  J Am Chem Soc       Date:  2022-02-09       Impact factor: 15.419

3.  Out-of-Equilibrium Self-Replication Allows Selection for Dynamic Kinetic Stability in a System of Competing Replicators.

Authors:  Bin Liu; Juntian Wu; Marc Geerts; Omer Markovitch; Charalampos G Pappas; Kai Liu; Sijbren Otto
Journal:  Angew Chem Int Ed Engl       Date:  2022-03-07       Impact factor: 16.823

4.  Prebiotically Plausible Autocatalytic Peptide Amyloids.

Authors:  Saroj K Rout; David Rhyner; Roland Riek; Jason Greenwald
Journal:  Chemistry       Date:  2021-12-20       Impact factor: 5.020

Review 5.  From Prebiotic Chemistry to Supramolecular Biomedical Materials: Exploring the Properties of Self-Assembling Nucleobase-Containing Peptides.

Authors:  Pasqualina Liana Scognamiglio; Chiara Platella; Ettore Napolitano; Domenica Musumeci; Giovanni Nicola Roviello
Journal:  Molecules       Date:  2021-06-10       Impact factor: 4.927

  5 in total

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