Literature DB >> 33093680

Harnessing chemical energy for the activation and joining of prebiotic building blocks.

Ziwei Liu1, Long-Fei Wu1, Jianfeng Xu1, Claudia Bonfio1, David A Russell1, John D Sutherland2.   

Abstract

Life is an out-of-equilibrium system sustained by a continuous supply of energy. In extant biology, the generation of the primary energy currency, adenosine 5'-triphosphate and its use in the synthesis of biomolecules require enzymes. Before their emergence, alternative energy sources, perhaps assisted by simple catalysts, must have mediated the activation of carboxylates and phosphates for condensation reactions. Here, we show that the chemical energy inherent to isonitriles can be harnessed to activate nucleoside phosphates and carboxylic acids through catalysis by acid and 4,5-dicyanoimidazole under mild aqueous conditions. Simultaneous activation of carboxylates and phosphates provides multiple pathways for the generation of reactive intermediates, including mixed carboxylic acid-phosphoric acid anhydrides, for the synthesis of peptidyl-RNAs, peptides, RNA oligomers and primordial phospholipids. Our results indicate that unified prebiotic activation chemistry could have enabled the joining of building blocks in aqueous solution from a common pool and enabled the progression of a system towards higher complexity, foreshadowing today's encapsulated peptide-nucleic acid system.

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Year:  2020        PMID: 33093680      PMCID: PMC7610406          DOI: 10.1038/s41557-020-00564-3

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  29 in total

1.  Eutectic phases in ice facilitate nonenzymatic nucleic acid synthesis.

Authors:  A Kanavarioti; P A Monnard; D W Deamer
Journal:  Astrobiology       Date:  2001       Impact factor: 4.335

2.  Amino acid dependent formation of phosphate anhydrides in water mediated by carbonyl sulfide.

Authors:  Luke J Leman; Leslie E Orgel; M Reza Ghadiri
Journal:  J Am Chem Soc       Date:  2006-01-11       Impact factor: 15.419

Review 3.  Adsorption and polymerization of amino acids on mineral surfaces: a review.

Authors:  Jean-François Lambert
Journal:  Orig Life Evol Biosph       Date:  2008-03-15       Impact factor: 1.950

4.  Possible prebiotic condensation of mononucleotides by cyanamide.

Authors:  J D Ibanez; A P Kimball; J Oro
Journal:  Science       Date:  1971-07-30       Impact factor: 47.728

5.  Catalysts for the self-polymerization of adenosine cyclic 2', 3'-phosphate.

Authors:  M S Verlander; R Lohrmann; L E Orgel
Journal:  J Mol Evol       Date:  1973-11-27       Impact factor: 2.395

6.  Prebiotic synthesis: phosphorylation in aqueous solution.

Authors:  R Lohrmann; L E Orgel
Journal:  Science       Date:  1968-07-05       Impact factor: 47.728

7.  Evolution of the genetic apparatus.

Authors:  L E Orgel
Journal:  J Mol Biol       Date:  1968-12       Impact factor: 5.469

8.  Carbonyl sulfide-mediated prebiotic formation of peptides.

Authors:  Luke Leman; Leslie Orgel; M Reza Ghadiri
Journal:  Science       Date:  2004-10-08       Impact factor: 47.728

9.  Peptide ligation by chemoselective aminonitrile coupling in water.

Authors:  Pierre Canavelli; Saidul Islam; Matthew W Powner
Journal:  Nature       Date:  2019-07-10       Impact factor: 49.962

10.  Tuning the reactivity of nitriles using Cu(ii) catalysis - potentially prebiotic activation of nucleotides.

Authors:  Ziwei Liu; Angelica Mariani; Longfei Wu; Dougal Ritson; Andrea Folli; Damien Murphy; John Sutherland
Journal:  Chem Sci       Date:  2018-07-25       Impact factor: 9.825

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  12 in total

1.  A prebiotically plausible scenario of an RNA-peptide world.

Authors:  Felix Müller; Luis Escobar; Felix Xu; Ewa Węgrzyn; Milda Nainytė; Tynchtyk Amatov; Chun-Yin Chan; Alexander Pichler; Thomas Carell
Journal:  Nature       Date:  2022-05-11       Impact factor: 69.504

Review 2.  Protometabolism as out-of-equilibrium chemistry.

Authors:  Serge Nader; Lorenzo Sebastianelli; Sheref S Mansy
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2022-05-23       Impact factor: 4.019

Review 3.  Prebiotic Pathway from Ribose to RNA Formation.

Authors:  Gaspar Banfalvi
Journal:  Int J Mol Sci       Date:  2021-04-08       Impact factor: 6.208

4.  Structured sequences emerge from random pool when replicated by templated ligation.

Authors:  Patrick W Kudella; Alexei V Tkachenko; Annalena Salditt; Sergei Maslov; Dieter Braun
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-23       Impact factor: 11.205

5.  Potentially Prebiotic Synthesis of Aminoacyl-RNA via a Bridging Phosphoramidate-Ester Intermediate.

Authors:  Samuel J Roberts; Ziwei Liu; John D Sutherland
Journal:  J Am Chem Soc       Date:  2022-03-01       Impact factor: 16.383

Review 6.  Illuminating Life's Origins: UV Photochemistry in Abiotic Synthesis of Biomolecules.

Authors:  Nicholas J Green; Jianfeng Xu; John D Sutherland
Journal:  J Am Chem Soc       Date:  2021-04-21       Impact factor: 15.419

7.  pH-Dependent peptide bond formation by the selective coupling of α-amino acids in water.

Authors:  Long-Fei Wu; Ziwei Liu; John D Sutherland
Journal:  Chem Commun (Camb)       Date:  2021-01-05       Impact factor: 6.222

8.  Interstrand Aminoacyl Transfer in a tRNA Acceptor Stem-Overhang Mimic.

Authors:  Long-Fei Wu; Meng Su; Ziwei Liu; Samuel J Bjork; John D Sutherland
Journal:  J Am Chem Soc       Date:  2021-07-20       Impact factor: 15.419

9.  Carbamoyl phosphate and its substitutes for the uracil synthesis in origins of life scenarios.

Authors:  Louis M P Ter-Ovanessian; Baptiste Rigaud; Alberto Mezzetti; Jean-François Lambert; Marie-Christine Maurel
Journal:  Sci Rep       Date:  2021-09-29       Impact factor: 4.379

10.  Timescales for Prebiotic Photochemistry Under Realistic Surface Ultraviolet Conditions.

Authors:  Paul B Rimmer; Samantha J Thompson; Jianfeng Xu; David A Russell; Nicholas J Green; Dougal J Ritson; John D Sutherland; Didier P Queloz
Journal:  Astrobiology       Date:  2021-06-21       Impact factor: 4.045

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