Literature DB >> 29311343

The Interplay between the RNA Decay and Translation Machinery in Eukaryotes.

Adam M Heck1,2, Jeffrey Wilusz1,2.   

Abstract

RNA decay plays a major role in regulating gene expression and is tightly networked with other aspects of gene expression to effectively coordinate post-transcriptional regulation. The goal of this work is to provide an overview of the major factors and pathways of general messenger RNA (mRNA) decay in eukaryotic cells, and then discuss the effective interplay of this cytoplasmic process with the protein synthesis machinery. Given the transcript-specific and fluid nature of mRNA stability in response to changing cellular conditions, understanding the fundamental networking between RNA decay and translation will provide a foundation for a complete mechanistic understanding of this important aspect of cell biology.
Copyright © 2018 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2018        PMID: 29311343      PMCID: PMC5932591          DOI: 10.1101/cshperspect.a032839

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  209 in total

Review 1.  Nonsense-Mediated mRNA Decay Begins Where Translation Ends.

Authors:  Evangelos D Karousis; Oliver Mühlemann
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

2.  The DEAD-Box Protein Dhh1p Couples mRNA Decay and Translation by Monitoring Codon Optimality.

Authors:  Aditya Radhakrishnan; Ying-Hsin Chen; Sophie Martin; Najwa Alhusaini; Rachel Green; Jeff Coller
Journal:  Cell       Date:  2016-09-15       Impact factor: 41.582

3.  MicroRNA-10a binds the 5'UTR of ribosomal protein mRNAs and enhances their translation.

Authors:  Ulf Andersson Ørom; Finn Cilius Nielsen; Anders H Lund
Journal:  Mol Cell       Date:  2008-05-23       Impact factor: 17.970

4.  3' Terminal oligo U-tract-mediated stimulation of decapping.

Authors:  Man-Gen Song; Megerditch Kiledjian
Journal:  RNA       Date:  2007-10-17       Impact factor: 4.942

5.  DDX6 Orchestrates Mammalian Progenitor Function through the mRNA Degradation and Translation Pathways.

Authors:  Ying Wang; Marc Arribas-Layton; Yifang Chen; Jens Lykke-Andersen; George L Sen
Journal:  Mol Cell       Date:  2015-09-24       Impact factor: 17.970

6.  Widespread Co-translational RNA Decay Reveals Ribosome Dynamics.

Authors:  Vicent Pelechano; Wu Wei; Lars M Steinmetz
Journal:  Cell       Date:  2015-06-04       Impact factor: 41.582

7.  Pat1 contributes to the RNA binding activity of the Lsm1-7-Pat1 complex.

Authors:  Ashis Chowdhury; Swathi Kalurupalle; Sundaresan Tharun
Journal:  RNA       Date:  2014-07-17       Impact factor: 4.942

8.  Competitive binding of CUGBP1 and HuR to occludin mRNA controls its translation and modulates epithelial barrier function.

Authors:  Ting-Xi Yu; Jaladanki N Rao; Tongtong Zou; Lan Liu; Lan Xiao; Miao Ouyang; Shan Cao; Myriam Gorospe; Jian-Ying Wang
Journal:  Mol Biol Cell       Date:  2012-11-14       Impact factor: 4.138

Review 9.  Lsm proteins and Hfq: Life at the 3' end.

Authors:  Carol J Wilusz; Jeffrey Wilusz
Journal:  RNA Biol       Date:  2013-02-07       Impact factor: 4.652

10.  miRISC and the CCR4-NOT complex silence mRNA targets independently of 43S ribosomal scanning.

Authors:  Duygu Kuzuoğlu-Öztürk; Dipankar Bhandari; Eric Huntzinger; Maria Fauser; Sigrun Helms; Elisa Izaurralde
Journal:  EMBO J       Date:  2016-03-23       Impact factor: 11.598

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  23 in total

1.  Cell-type specific polysome profiling from mammalian tissues.

Authors:  Joseph Seimetz; Waqar Arif; Sushant Bangru; Mikel Hernaez; Auinash Kalsotra
Journal:  Methods       Date:  2018-11-27       Impact factor: 3.608

Review 2.  Toward a Kinetic Understanding of Eukaryotic Translation.

Authors:  Masaaki Sokabe; Christopher S Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

3.  Transcriptome maps of general eukaryotic RNA degradation factors.

Authors:  Salma Sohrabi-Jahromi; Katharina B Hofmann; Andrea Boltendahl; Christian Roth; Saskia Gressel; Carlo Baejen; Johannes Soeding; Patrick Cramer
Journal:  Elife       Date:  2019-05-28       Impact factor: 8.140

Review 4.  Nonsense-Mediated mRNA Decay Begins Where Translation Ends.

Authors:  Evangelos D Karousis; Oliver Mühlemann
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

Review 5.  Mechanistic Insights into MicroRNA-Mediated Gene Silencing.

Authors:  Thomas F Duchaine; Marc R Fabian
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-03-01       Impact factor: 10.005

Review 6.  The Epitranscriptome in Translation Regulation.

Authors:  Eyal Peer; Sharon Moshitch-Moshkovitz; Gideon Rechavi; Dan Dominissini
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-08-01       Impact factor: 10.005

Review 7.  On the edge of degradation: Autophagy regulation by RNA decay.

Authors:  Elizabeth Delorme-Axford; Daniel J Klionsky
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-12-17       Impact factor: 9.957

8.  Motif V regulates energy transduction between the flavivirus NS3 ATPase and RNA-binding cleft.

Authors:  Kelly E Du Pont; Russell B Davidson; Martin McCullagh; Brian J Geiss
Journal:  J Biol Chem       Date:  2019-12-30       Impact factor: 5.157

9.  Monitoring of XRN4 Targets Reveals the Importance of Cotranslational Decay during Arabidopsis Development.

Authors:  Marie-Christine Carpentier; Jean-Marc Deragon; Viviane Jean; Seng Hour Vichet Be; Cécile Bousquet-Antonelli; Rémy Merret
Journal:  Plant Physiol       Date:  2020-09-10       Impact factor: 8.340

Review 10.  The molecular biology of FMRP: new insights into fragile X syndrome.

Authors:  Joel D Richter; Xinyu Zhao
Journal:  Nat Rev Neurosci       Date:  2021-02-19       Impact factor: 38.755

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