Literature DB >> 30560575

On the edge of degradation: Autophagy regulation by RNA decay.

Elizabeth Delorme-Axford1, Daniel J Klionsky1.   

Abstract

Cells must dynamically adapt to altered environmental conditions, particularly during times of stress, to ensure their ability to function effectively and survive. The macroautophagy/autophagy pathway is highly conserved across eukaryotic cells and promotes cell survival during stressful conditions. In general, basal autophagy occurs at a low level to sustain cellular homeostasis and metabolism. However, autophagy is robustly upregulated in response to nutrient deprivation, pathogen infection and increased accumulation of potentially toxic protein aggregates and superfluous organelles. Within the cell, RNA decay maintains quality control to remove aberrant transcripts and regulate appropriate levels of gene expression. Recent evidence has identified components of the cellular mRNA decay machinery as novel regulators of autophagy. Here, we review current findings that demonstrate how autophagy is modulated through RNA decay. This article is categorized under: RNA Turnover and Surveillance > Turnover/Surveillance Mechanisms RNA Turnover and Surveillance > Regulation of RNA Stability.
© 2018 Wiley Periodicals, Inc.

Entities:  

Keywords:  DDX6; Dcp2; Dhh1; RNA degradation; Xrn1/XRN1; mRNA decay; vacuole; yeast

Mesh:

Year:  2018        PMID: 30560575      PMCID: PMC6450747          DOI: 10.1002/wrna.1522

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  109 in total

1.  Ordered organelle degradation during starvation-induced autophagy.

Authors:  Anders Riis Kristensen; Søren Schandorff; Maria Høyer-Hansen; Maria Overbeck Nielsen; Marja Jäättelä; Jörn Dengjel; Jens S Andersen
Journal:  Mol Cell Proteomics       Date:  2008-08-06       Impact factor: 5.911

2.  Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease.

Authors:  Claudine Kraft; Anna Deplazes; Marc Sohrmann; Matthias Peter
Journal:  Nat Cell Biol       Date:  2008-04-06       Impact factor: 28.824

Review 3.  Autophagosome Maturation and Fusion.

Authors:  Fulvio Reggiori; Christian Ungermann
Journal:  J Mol Biol       Date:  2017-01-08       Impact factor: 5.469

4.  Phosphorylation of Atg9 regulates movement to the phagophore assembly site and the rate of autophagosome formation.

Authors:  Yuchen Feng; Steven K Backues; Misuzu Baba; Jin-mi Heo; J Wade Harper; Daniel J Klionsky
Journal:  Autophagy       Date:  2016       Impact factor: 16.016

5.  The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy.

Authors:  Takao Hanada; Nobuo N Noda; Yoshinori Satomi; Yoshinobu Ichimura; Yuko Fujioka; Toshifumi Takao; Fuyuhiko Inagaki; Yoshinori Ohsumi
Journal:  J Biol Chem       Date:  2007-11-06       Impact factor: 5.157

Review 6.  The Atg17-Atg31-Atg29 Complex Coordinates with Atg11 to Recruit the Vam7 SNARE and Mediate Autophagosome-Vacuole Fusion.

Authors:  Xu Liu; Kai Mao; Angela Y H Yu; Amin Omairi-Nasser; Jotham Austin; Benjamin S Glick; Calvin K Yip; Daniel J Klionsky
Journal:  Curr Biol       Date:  2016-01-07       Impact factor: 10.834

7.  Inhibition of nonsense-mediated RNA decay activates autophagy.

Authors:  Jordan Wengrod; Leenus Martin; Ding Wang; Pamela Frischmeyer-Guerrerio; Harry C Dietz; Lawrence B Gardner
Journal:  Mol Cell Biol       Date:  2013-03-18       Impact factor: 4.272

Review 8.  Autophagy pathway: Cellular and molecular mechanisms.

Authors:  Li Yu; Yang Chen; Sharon A Tooze
Journal:  Autophagy       Date:  2017-12-31       Impact factor: 16.016

9.  Formation process of autophagosome is traced with Apg8/Aut7p in yeast.

Authors:  T Kirisako; M Baba; N Ishihara; K Miyazawa; M Ohsumi; T Yoshimori; T Noda; Y Ohsumi
Journal:  J Cell Biol       Date:  1999-10-18       Impact factor: 10.539

10.  Subversion of cellular autophagosomal machinery by RNA viruses.

Authors:  William T Jackson; Thomas H Giddings; Matthew P Taylor; Sara Mulinyawe; Marlene Rabinovitch; Ron R Kopito; Karla Kirkegaard
Journal:  PLoS Biol       Date:  2005-04-26       Impact factor: 8.029

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  4 in total

1.  Biochemical Characterization of Yeast Xrn1.

Authors:  Conner J Langeberg; William R W Welch; John V McGuire; Alison Ashby; Alexander D Jackson; Erich G Chapman
Journal:  Biochemistry       Date:  2020-04-13       Impact factor: 3.162

2.  RNA decay in processing bodies is indispensable for adipogenesis.

Authors:  Ryotaro Maeda; Daisuke Kami; Akira Shikuma; Yosuke Suzuki; Toshihiko Taya; Satoaki Matoba; Satoshi Gojo
Journal:  Cell Death Dis       Date:  2021-03-17       Impact factor: 8.469

Review 3.  The Role of Autophagy in Skeletal Muscle Diseases.

Authors:  Qianghua Xia; Xubo Huang; Jieru Huang; Yongfeng Zheng; Michael E March; Jin Li; Yongjie Wei
Journal:  Front Physiol       Date:  2021-03-25       Impact factor: 4.566

4.  LC3B is an RNA-binding protein to trigger rapid mRNA degradation during autophagy.

Authors:  Hyun Jung Hwang; Hongseok Ha; Ban Seok Lee; Bong Heon Kim; Hyun Kyu Song; Yoon Ki Kim
Journal:  Nat Commun       Date:  2022-03-17       Impact factor: 14.919

  4 in total

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