Literature DB >> 29306432

Methods for the Detection, Study, and Dynamic Profiling of O-GlcNAc Glycosylation.

John W Thompson1, Matthew E Griffin1, Linda C Hsieh-Wilson2.   

Abstract

The addition of O-linked β-N-acetylglucosamine (O-GlcNAc) to serine/threonine residues of proteins is a ubiquitous posttranslational modification found in all multicellular organisms. Like phosphorylation, O-GlcNAc glycosylation (O-GlcNAcylation) is inducible and regulates a myriad of physiological and pathological processes. However, understanding the diverse functions of O-GlcNAcylation is often challenging due to the difficulty of detecting and quantifying the modification. Thus, robust methods to study O-GlcNAcylation are essential to elucidate its key roles in the regulation of individual proteins, complex cellular processes, and disease. In this chapter, we describe a set of chemoenzymatic labeling methods to (1) detect O-GlcNAcylation on proteins of interest, (2) monitor changes in both the total levels of O-GlcNAcylation and its stoichiometry on proteins of interest, and (3) enable mapping of O-GlcNAc to specific serine/threonine residues within proteins to facilitate functional studies. First, we outline a procedure for the expression and purification of a multiuse mutant galactosyltransferase enzyme (Y289L GalT). We then describe the use of Y289L GalT to modify O-GlcNAc residues with a functional handle, N-azidoacetylgalactosamine (GalNAz). Finally, we discuss several applications of the copper-catalyzed azide-alkyne cycloaddition "click" reaction to attach various alkyne-containing chemical probes to GalNAz and demonstrate how this functionalization of O-GlcNAc-modified proteins can be used to realize (1)-(3) above. Overall, these methods, which utilize commercially available reagents and standard protein analytical tools, will serve to advance our understanding of the diverse and important functions of O-GlcNAcylation.
© 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Chemoenzymatic labeling; Copper-catalyzed azide-alkyne cycloaddition; O-GlcNAcylation; O-linked β-N-acetylglucosamine; Posttranslational modification; Protein glycosylation

Mesh:

Substances:

Year:  2017        PMID: 29306432      PMCID: PMC5886303          DOI: 10.1016/bs.mie.2017.06.009

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  57 in total

1.  Identification of O-GlcNAc sites on proteins.

Authors:  Stephen A Whelan; Gerald W Hart
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

2.  O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry.

Authors:  Keith Vosseller; Jonathan C Trinidad; Robert J Chalkley; Christian G Specht; Agnes Thalhammer; Aenoch J Lynn; June O Snedecor; Shenheng Guan; Katalin F Medzihradszky; David A Maltby; Ralf Schoepfer; Alma L Burlingame
Journal:  Mol Cell Proteomics       Date:  2006-02-01       Impact factor: 5.911

3.  In-gel digestion for mass spectrometric characterization of proteins and proteomes.

Authors:  Andrej Shevchenko; Henrik Tomas; Jan Havlis; Jesper V Olsen; Matthias Mann
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

4.  In vitro folding of β-1,4galactosyltransferase and polypeptide-α-N-acetylgalactosaminyltransferase from the inclusion bodies.

Authors:  Boopathy Ramakrishnan; Pradman K Qasba
Journal:  Methods Mol Biol       Date:  2013

5.  Increased O-GlcNAc levels correlate with decreased O-GlcNAcase levels in Alzheimer disease brain.

Authors:  Sarah Förster; Andrew S Welleford; Judy C Triplett; Rukhsana Sultana; Brigitte Schmitz; D Allan Butterfield
Journal:  Biochim Biophys Acta       Date:  2014-05-23

6.  Structure-based design of beta 1,4-galactosyltransferase I (beta 4Gal-T1) with equally efficient N-acetylgalactosaminyltransferase activity: point mutation broadens beta 4Gal-T1 donor specificity.

Authors:  Boopathy Ramakrishnan; Pradman K Qasba
Journal:  J Biol Chem       Date:  2002-03-26       Impact factor: 5.157

7.  Enrichment and site mapping of O-linked N-acetylglucosamine by a combination of chemical/enzymatic tagging, photochemical cleavage, and electron transfer dissociation mass spectrometry.

Authors:  Zihao Wang; Namrata D Udeshi; Meaghan O'Malley; Jeffrey Shabanowitz; Donald F Hunt; Gerald W Hart
Journal:  Mol Cell Proteomics       Date:  2009-08-19       Impact factor: 5.911

8.  Reduced O-GlcNAcylation links lower brain glucose metabolism and tau pathology in Alzheimer's disease.

Authors:  Fei Liu; Jianhua Shi; Hitoshi Tanimukai; Jinhua Gu; Jianlan Gu; Inge Grundke-Iqbal; Khalid Iqbal; Cheng-Xin Gong
Journal:  Brain       Date:  2009-05-18       Impact factor: 13.501

9.  Changes in metabolic chemical reporter structure yield a selective probe of O-GlcNAc modification.

Authors:  Kelly N Chuh; Balyn W Zaro; Friedrich Piller; Véronique Piller; Matthew R Pratt
Journal:  J Am Chem Soc       Date:  2014-08-25       Impact factor: 15.419

10.  Nuclear pore complex glycoproteins contain cytoplasmically disposed O-linked N-acetylglucosamine.

Authors:  G D Holt; C M Snow; A Senior; R S Haltiwanger; L Gerace; G W Hart
Journal:  J Cell Biol       Date:  1987-05       Impact factor: 10.539

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  19 in total

1.  Identifying potentially O-GlcNAcylated proteins using metabolic labeling, bioorthogonal enrichment, and Western blotting.

Authors:  Narek Darabedian; Matthew R Pratt
Journal:  Methods Enzymol       Date:  2019-03-06       Impact factor: 1.600

Review 2.  Chemical and Biochemical Strategies To Explore the Substrate Recognition of O-GlcNAc-Cycling Enzymes.

Authors:  Chia-Wei Hu; Matthew Worth; Hao Li; Jiaoyang Jiang
Journal:  Chembiochem       Date:  2018-11-12       Impact factor: 3.164

3.  Recent advances in mass spectrometry (MS)-based glycoproteomics in complex biological samples.

Authors:  Zhengwei Chen; Junfeng Huang; Lingjun Li
Journal:  Trends Analyt Chem       Date:  2018-10-15       Impact factor: 12.296

4.  Thermal Proteome Profiling Reveals the O-GlcNAc-Dependent Meltome.

Authors:  Dustin T King; Jesús E Serrano-Negrón; Yanping Zhu; Christopher L Moore; Matthew D Shoulders; Leonard J Foster; David J Vocadlo
Journal:  J Am Chem Soc       Date:  2022-03-01       Impact factor: 15.419

5.  The O-GlcNAc Modification on Kinases.

Authors:  Paul A Schwein; Christina M Woo
Journal:  ACS Chem Biol       Date:  2020-03-10       Impact factor: 5.100

6.  Engineering a Proximity-Directed O-GlcNAc Transferase for Selective Protein O-GlcNAcylation in Cells.

Authors:  Daniel H Ramirez; Chanat Aonbangkhen; Hung-Yi Wu; Jeffrey A Naftaly; Stephanie Tang; Timothy R O'Meara; Christina M Woo
Journal:  ACS Chem Biol       Date:  2020-03-02       Impact factor: 5.100

7.  Optimization of Chemoenzymatic Mass Tagging by Strain-Promoted Cycloaddition (SPAAC) for the Determination of O-GlcNAc Stoichiometry by Western Blotting.

Authors:  Narek Darabedian; John W Thompson; Kelly N Chuh; Linda C Hsieh-Wilson; Matthew R Pratt
Journal:  Biochemistry       Date:  2018-09-24       Impact factor: 3.162

8.  Deciphering the Functions of O-GlcNAc Glycosylation in the Brain: The Role of Site-Specific Quantitative O-GlcNAcomics.

Authors:  John W Thompson; Alexander W Sorum; Linda C Hsieh-Wilson
Journal:  Biochemistry       Date:  2018-07-02       Impact factor: 3.162

9.  Fluorescent Detection of O-GlcNAc via Tandem Glycan Labeling.

Authors:  Zhengliang L Wu; Ang Luo; Alex Grill; Taotao Lao; Yonglong Zou; Yue Chen
Journal:  Bioconjug Chem       Date:  2020-08-30       Impact factor: 4.774

Review 10.  Chemistry-Assisted Proteomic Profiling of O-GlcNAcylation.

Authors:  Qiang Zhu; Wen Yi
Journal:  Front Chem       Date:  2021-06-25       Impact factor: 5.221

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