Literature DB >> 31155058

Identifying potentially O-GlcNAcylated proteins using metabolic labeling, bioorthogonal enrichment, and Western blotting.

Narek Darabedian1, Matthew R Pratt2.   

Abstract

O-GlcNAcylation is a widespread posttranslational modification of intracellular proteins. Phenotypic and genetic experiments have established key roles for O-GlcNAc in development, mammalian cell survival, and several human diseases. However, the underlying mechanisms by which this modification alters biological pathways are still being discovered. An important part of this discovery process is the discovery of O-GlcNAcylated proteins, where chemical approaches have been particularly powerful. Here we describe how to combine one of these approaches, metabolic chemical reporters (MCRs), with bioorthogonal chemistry and Western blotting to identify potentially O-GlcNAcylated proteins.
© 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bioorthogonal; Biotin enrichment; Click chemistry; Metabolic chemical reporter; O-GlcNAc

Mesh:

Substances:

Year:  2019        PMID: 31155058      PMCID: PMC6860911          DOI: 10.1016/bs.mie.2019.02.017

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  29 in total

1.  Detection and analysis of proteins modified by O-linked N-acetylglucosamine.

Authors:  Natasha E Zachara; Keith Vosseller; Gerald W Hart
Journal:  Curr Protoc Mol Biol       Date:  2011-07

2.  Structure-based design of beta 1,4-galactosyltransferase I (beta 4Gal-T1) with equally efficient N-acetylgalactosaminyltransferase activity: point mutation broadens beta 4Gal-T1 donor specificity.

Authors:  Boopathy Ramakrishnan; Pradman K Qasba
Journal:  J Biol Chem       Date:  2002-03-26       Impact factor: 5.157

3.  The Small Molecule 2-Azido-2-deoxy-glucose Is a Metabolic Chemical Reporter of O-GlcNAc Modifications in Mammalian Cells, Revealing an Unexpected Promiscuity of O-GlcNAc Transferase.

Authors:  Balyn W Zaro; Anna R Batt; Kelly N Chuh; Marisol X Navarro; Matthew R Pratt
Journal:  ACS Chem Biol       Date:  2017-01-30       Impact factor: 5.100

4.  Characterization of a mouse monoclonal antibody specific for O-linked N-acetylglucosamine.

Authors:  F I Comer; K Vosseller; L Wells; M A Accavitti; G W Hart
Journal:  Anal Biochem       Date:  2001-06-15       Impact factor: 3.365

5.  Catalytic Promiscuity of O-GlcNAc Transferase Enables Unexpected Metabolic Engineering of Cytoplasmic Proteins with 2-Azido-2-deoxy-glucose.

Authors:  David L Shen; Ta-Wei Liu; Wesley Zandberg; Tom Clark; Razieh Eskandari; Matthew G Alteen; Hong Yee Tan; Yanping Zhu; Samy Cecioni; David Vocadlo
Journal:  ACS Chem Biol       Date:  2016-12-09       Impact factor: 5.100

6.  Metabolic cross-talk allows labeling of O-linked beta-N-acetylglucosamine-modified proteins via the N-acetylgalactosamine salvage pathway.

Authors:  Michael Boyce; Isaac S Carrico; Anjali S Ganguli; Seok-Ho Yu; Matthew J Hangauer; Sarah C Hubbard; Jennifer J Kohler; Carolyn R Bertozzi
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-07       Impact factor: 11.205

Review 7.  Site-specific interplay between O-GlcNAcylation and phosphorylation in cellular regulation.

Authors:  Ping Hu; Shino Shimoji; Gerald W Hart
Journal:  FEBS Lett       Date:  2010-04-22       Impact factor: 4.124

Review 8.  Chemical approaches to study O-GlcNAcylation.

Authors:  Partha S Banerjee; Gerald W Hart; Jin Won Cho
Journal:  Chem Soc Rev       Date:  2012-12-18       Impact factor: 54.564

Review 9.  Chemical Methods for Encoding and Decoding of Posttranslational Modifications.

Authors:  Kelly N Chuh; Anna R Batt; Matthew R Pratt
Journal:  Cell Chem Biol       Date:  2016-01-21       Impact factor: 8.116

10.  Monoclonal antibodies identify a group of nuclear pore complex glycoproteins.

Authors:  C M Snow; A Senior; L Gerace
Journal:  J Cell Biol       Date:  1987-05       Impact factor: 10.539

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  4 in total

Review 1.  Tools, tactics and objectives to interrogate cellular roles of O-GlcNAc in disease.

Authors:  Charlie Fehl; John A Hanover
Journal:  Nat Chem Biol       Date:  2021-12-21       Impact factor: 16.174

2.  Precision Mapping of O-Linked N-Acetylglucosamine Sites in Proteins Using Ultraviolet Photodissociation Mass Spectrometry.

Authors:  Edwin E Escobar; Dustin T King; Jesús E Serrano-Negrón; Matthew G Alteen; David J Vocadlo; Jennifer S Brodbelt
Journal:  J Am Chem Soc       Date:  2020-06-19       Impact factor: 15.419

3.  [Precise identification of O-linked β-N-acetylglucosamine peptides based on O-mesitylenesulfonylhydroxylamine elimination reaction].

Authors:  Zhixin Guo; Hang Li; Weijie Qin
Journal:  Se Pu       Date:  2021-11

4.  O-Acetylated Chemical Reporters of Glycosylation Can Display Metabolism-Dependent Background Labeling of Proteins but Are Generally Reliable Tools for the Identification of Glycoproteins.

Authors:  Narek Darabedian; Bo Yang; Richie Ding; Giuliano Cutolo; Balyn W Zaro; Christina M Woo; Matthew R Pratt
Journal:  Front Chem       Date:  2020-04-28       Impact factor: 5.221

  4 in total

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