Literature DB >> 32119511

Engineering a Proximity-Directed O-GlcNAc Transferase for Selective Protein O-GlcNAcylation in Cells.

Daniel H Ramirez1, Chanat Aonbangkhen1, Hung-Yi Wu1, Jeffrey A Naftaly1, Stephanie Tang1, Timothy R O'Meara1, Christina M Woo1.   

Abstract

O-Linked β-N-acetylglucosamine (O-GlcNAc) is a monosaccharide that plays an essential role in cellular signaling throughout the nucleocytoplasmic proteome of eukaryotic cells. Strategies for selectively increasing O-GlcNAc levels on a target protein in cells would accelerate studies of this essential modification. Here, we report a generalizable strategy for introducing O-GlcNAc into selected target proteins in cells using a nanobody as a proximity-directing agent fused to O-GlcNAc transferase (OGT). Fusion of a nanobody that recognizes GFP (nGFP) or a nanobody that recognizes the four-amino acid sequence EPEA (nEPEA) to OGT yielded nanobody-OGT constructs that selectively delivered O-GlcNAc to a series of tagged target proteins (e.g., JunB, cJun, and Nup62). Truncation of the tetratricopeptide repeat domain as in OGT(4) increased selectivity for the target protein through the nanobody by reducing global elevation of O-GlcNAc levels in the cell. Quantitative chemical proteomics confirmed the increase in O-GlcNAc to the target protein by nanobody-OGT(4). Glycoproteomics revealed that nanobody-OGT(4) or full-length OGT produced a similar glycosite profile on the target protein JunB and Nup62. Finally, we demonstrate the ability to selectively target endogenous α-synuclein for O-GlcNAcylation in HEK293T cells. These first proximity-directed OGT constructs provide a flexible strategy for targeting additional proteins and a template for further engineering of OGT and the O-GlcNAc proteome in the future. The use of a nanobody to redirect OGT substrate selection for glycosylation of desired proteins in cells may further constitute a generalizable strategy for controlling a broader array of post-translational modifications in cells.

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Year:  2020        PMID: 32119511      PMCID: PMC7296736          DOI: 10.1021/acschembio.0c00074

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  43 in total

Review 1.  Nanobodies as Probes for Protein Dynamics in Vitro and in Cells.

Authors:  Oleg Y Dmitriev; Svetlana Lutsenko; Serge Muyldermans
Journal:  J Biol Chem       Date:  2015-12-16       Impact factor: 5.157

2.  A potent mechanism-inspired O-GlcNAcase inhibitor that blocks phosphorylation of tau in vivo.

Authors:  Scott A Yuzwa; Matthew S Macauley; Julia E Heinonen; Xiaoyang Shan; Rebecca J Dennis; Yuan He; Garrett E Whitworth; Keith A Stubbs; Ernest J McEachern; Gideon J Davies; David J Vocadlo
Journal:  Nat Chem Biol       Date:  2008-06-29       Impact factor: 15.040

Review 3.  Chemically induced proximity in biology and medicine.

Authors:  Benjamin Z Stanton; Emma J Chory; Gerald R Crabtree
Journal:  Science       Date:  2018-03-09       Impact factor: 47.728

4.  Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.

Authors:  Sheng Wang; Feng Yang; Vladislav A Petyuk; Anil K Shukla; Matthew E Monroe; Marina A Gritsenko; Karin D Rodland; Richard D Smith; Wei-Jun Qian; Cheng-Xin Gong; Tao Liu
Journal:  J Pathol       Date:  2017-07-28       Impact factor: 7.996

5.  Aspartate Residues Far from the Active Site Drive O-GlcNAc Transferase Substrate Selection.

Authors:  Cassandra M Joiner; Zebulon G Levine; Chanat Aonbangkhen; Christina M Woo; Suzanne Walker
Journal:  J Am Chem Soc       Date:  2019-08-07       Impact factor: 15.419

6.  Roles of the tetratricopeptide repeat domain in O-GlcNAc transferase targeting and protein substrate specificity.

Authors:  Sai Prasad N Iyer; Gerald W Hart
Journal:  J Biol Chem       Date:  2003-04-30       Impact factor: 5.157

7.  A neutral diphosphate mimic crosslinks the active site of human O-GlcNAc transferase.

Authors:  Jiaoyang Jiang; Michael B Lazarus; Lincoln Pasquina; Piotr Sliz; Suzanne Walker
Journal:  Nat Chem Biol       Date:  2011-11-13       Impact factor: 15.040

8.  Dynamic interplay between catalytic and lectin domains of GalNAc-transferases modulates protein O-glycosylation.

Authors:  Erandi Lira-Navarrete; Matilde de Las Rivas; Ismael Compañón; María Carmen Pallarés; Yun Kong; Javier Iglesias-Fernández; Gonçalo J L Bernardes; Jesús M Peregrina; Carme Rovira; Pau Bernadó; Pierpaolo Bruscolini; Henrik Clausen; Anabel Lostao; Francisco Corzana; Ramon Hurtado-Guerrero
Journal:  Nat Commun       Date:  2015-05-05       Impact factor: 14.919

9.  Catalytic deficiency of O-GlcNAc transferase leads to X-linked intellectual disability.

Authors:  Veronica M Pravata; Villo Muha; Mehmet Gundogdu; Andrew T Ferenbach; Poonam S Kakade; Vasudha Vandadi; Ariane C Wilmes; Vladimir S Borodkin; Shelagh Joss; Marios P Stavridis; Daan M F van Aalten
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-11       Impact factor: 11.205

10.  Genetic recoding to dissect the roles of site-specific protein O-GlcNAcylation.

Authors:  Andrii Gorelik; Sergio Galan Bartual; Vladimir S Borodkin; Joby Varghese; Andrew T Ferenbach; Daan M F van Aalten
Journal:  Nat Struct Mol Biol       Date:  2019-11-06       Impact factor: 15.369

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  25 in total

Review 1.  Exploring cellular biochemistry with nanobodies.

Authors:  Ross W Cheloha; Thibault J Harmand; Charlotte Wijne; Thomas U Schwartz; Hidde L Ploegh
Journal:  J Biol Chem       Date:  2020-08-31       Impact factor: 5.157

Review 2.  Tools for mammalian glycoscience research.

Authors:  Matthew E Griffin; Linda C Hsieh-Wilson
Journal:  Cell       Date:  2022-07-08       Impact factor: 66.850

3.  Studying Protein Function Using Nanobodies and Other Protein Binders in Drosophila.

Authors:  Katarzyna Lepeta; Milena Bauer; Gustavo Aguilar; M Alessandra Vigano; Shinya Matsuda; Markus Affolter
Journal:  Methods Mol Biol       Date:  2022

4.  O-GlcNAcylation of High Mobility Group Box 1 (HMGB1) Alters Its DNA Binding and DNA Damage Processing Activities.

Authors:  Aaron T Balana; Anirban Mukherjee; Harsh Nagpal; Stuart P Moon; Beat Fierz; Karen M Vasquez; Matthew R Pratt
Journal:  J Am Chem Soc       Date:  2021-09-21       Impact factor: 16.383

5.  The O-GlcNAc Modification on Kinases.

Authors:  Paul A Schwein; Christina M Woo
Journal:  ACS Chem Biol       Date:  2020-03-10       Impact factor: 5.100

6.  Elucidating the protein substrate recognition of O-GlcNAc transferase (OGT) toward O-GlcNAcase (OGA) using a GlcNAc electrophilic probe.

Authors:  Adam Kositzke; Dacheng Fan; Ao Wang; Hao Li; Matthew Worth; Jiaoyang Jiang
Journal:  Int J Biol Macromol       Date:  2020-12-18       Impact factor: 6.953

7.  Truncation of the TPR domain of OGT alters substrate and glycosite selection.

Authors:  Daniel H Ramirez; Bo Yang; Alexandria K D'Souza; Dacheng Shen; Christina M Woo
Journal:  Anal Bioanal Chem       Date:  2021-11-02       Impact factor: 4.142

8.  O-GlcNAc Engineering on a Target Protein in Cells with Nanobody-OGT and Nanobody-splitOGA.

Authors:  Daniel H Ramirez; Yun Ge; Christina M Woo
Journal:  Curr Protoc       Date:  2021-05

Review 9.  Chemistry-Assisted Proteomic Profiling of O-GlcNAcylation.

Authors:  Qiang Zhu; Wen Yi
Journal:  Front Chem       Date:  2021-06-25       Impact factor: 5.221

Review 10.  Role of O-Linked N-Acetylglucosamine Protein Modification in Cellular (Patho)Physiology.

Authors:  John C Chatham; Jianhua Zhang; Adam R Wende
Journal:  Physiol Rev       Date:  2020-07-30       Impact factor: 37.312

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