Literature DB >> 30169966

Optimization of Chemoenzymatic Mass Tagging by Strain-Promoted Cycloaddition (SPAAC) for the Determination of O-GlcNAc Stoichiometry by Western Blotting.

Narek Darabedian, John W Thompson1, Kelly N Chuh, Linda C Hsieh-Wilson1, Matthew R Pratt.   

Abstract

The dynamic modification of intracellular proteins by O-linked β -N-acetylglucosamine (O-GlcNAcylation) plays critical roles in many cellular processes. Although various methods have been developed for O-GlcNAc detection, there are few techniques for monitoring glycosylation stoichiometry and state (i.e., mono-, di-, etc., O-GlcNAcylated). Measuring the levels of O-GlcNAcylation on a given substrate protein is important for understanding the biology of this critical modification and for prioritizing substrates for functional studies. One powerful solution to this limitation involves the chemoenzymatic installation of polyethylene glycol polymers of defined molecular mass onto O-GlcNAcylated proteins. These "mass tags" produce shifts in protein migration during sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) that can be detected by Western blotting. Broad adoption of this method by the scientific community has been limited, however, by a lack of commercially available reagents and well-defined protein standards. Here, we develop a "click chemistry" approach to this method using entirely commercial reagents and confirm the accuracy of the approach using a semisynthetic O-GlcNAcylated protein. Our studies establish a new, expedited experimental workflow and standardized methods that can be readily utilized by non-experts to quantify the O-GlcNAc stoichiometry and state on endogenous proteins in any cell or tissue lysate.

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Year:  2018        PMID: 30169966      PMCID: PMC6211186          DOI: 10.1021/acs.biochem.8b00648

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  25 in total

1.  The O-GlcNAc transferase gene resides on the X chromosome and is essential for embryonic stem cell viability and mouse ontogeny.

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Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

2.  Structure-based design of beta 1,4-galactosyltransferase I (beta 4Gal-T1) with equally efficient N-acetylgalactosaminyltransferase activity: point mutation broadens beta 4Gal-T1 donor specificity.

Authors:  Boopathy Ramakrishnan; Pradman K Qasba
Journal:  J Biol Chem       Date:  2002-03-26       Impact factor: 5.157

3.  O-GlcNAc modification of the runt-related transcription factor 2 (Runx2) links osteogenesis and nutrient metabolism in bone marrow mesenchymal stem cells.

Authors:  Alexis K Nagel; Lauren E Ball
Journal:  Mol Cell Proteomics       Date:  2014-09-03       Impact factor: 5.911

Review 4.  O-GlcNAc in cancer biology.

Authors:  Zhiyuan Ma; Keith Vosseller
Journal:  Amino Acids       Date:  2013-07-09       Impact factor: 3.520

5.  Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.

Authors:  Sheng Wang; Feng Yang; Vladislav A Petyuk; Anil K Shukla; Matthew E Monroe; Marina A Gritsenko; Karin D Rodland; Richard D Smith; Wei-Jun Qian; Cheng-Xin Gong; Tao Liu
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Review 6.  Chemical approaches to study O-GlcNAcylation.

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7.  Optimizing the selectivity of DIFO-based reagents for intracellular bioorthogonal applications.

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8.  Expressed protein ligation: a general method for protein engineering.

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9.  Dynamic O-GlcNAc modification regulates CREB-mediated gene expression and memory formation.

Authors:  Jessica E Rexach; Peter M Clark; Daniel E Mason; Rachael L Neve; Eric C Peters; Linda C Hsieh-Wilson
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10.  Microarray discovery of new OGT substrates: the medulloblastoma oncogene OTX2 is O-GlcNAcylated.

Authors:  Rodrigo F Ortiz-Meoz; Yifat Merbl; Marc W Kirschner; Suzanne Walker
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  12 in total

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Authors:  Christopher G Parker; Matthew R Pratt
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2.  Thermal Proteome Profiling Reveals the O-GlcNAc-Dependent Meltome.

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Review 3.  Tools, tactics and objectives to interrogate cellular roles of O-GlcNAc in disease.

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Journal:  Nat Chem Biol       Date:  2021-12-21       Impact factor: 16.174

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Review 5.  Recent Advances in Glycoproteomic Analysis by Mass Spectrometry.

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6.  O-GlcNAc Engineering on a Target Protein in Cells with Nanobody-OGT and Nanobody-splitOGA.

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Review 7.  O-GlcNAcylated peptides and proteins for structural and functional studies.

Authors:  Aaron T Balana; Stuart P Moon; Matthew R Pratt
Journal:  Curr Opin Struct Biol       Date:  2021-01-09       Impact factor: 7.786

Review 8.  Chemistry-Assisted Proteomic Profiling of O-GlcNAcylation.

Authors:  Qiang Zhu; Wen Yi
Journal:  Front Chem       Date:  2021-06-25       Impact factor: 5.221

9.  Exploring structural dynamics of a membrane protein by combining bioorthogonal chemistry and cysteine mutagenesis.

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Review 10.  Generating orthogonal glycosyltransferase and nucleotide sugar pairs as next-generation glycobiology tools.

Authors:  Anna Cioce; Stacy A Malaker; Benjamin Schumann
Journal:  Curr Opin Chem Biol       Date:  2020-10-27       Impact factor: 8.822

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