Literature DB >> 29256118

Lipid environment of membrane proteins in cryo-EM based structural analysis.

Kazuhiro Mio1,2, Chikara Sato3.   

Abstract

Cryoelectron microscopy (cryo-EM) in association with a single particle analysis method (SPA) is now a promising tool to determine the structures of proteins and their macromolecular complexes. The development of direct electron detection cameras and image processing technologies has allowed the structures of many important proteins to be solved at near-atomic resolution or, in some cases, at atomic resolution, by overcoming difficulties in crystallization or low yield of protein production. In the case of membrane-integrated proteins, the proteins were traditionally solubilized and stabilized with various kind of detergents. However, the density of detergent micelles diminished the contrast of membrane proteins in cryo-EM studies and made it difficult to obtain high-resolution structures. To improve the resolution of membrane protein structures in cryo-EM studies, major improvements have been made both in sample preparation techniques and in hardware and software developments. The focus of our review is on improvements which have been made in the various techniques for sample preparation for cryo-EM studies, with a specific interest placed on techniques for mimicking the lipid environment of membrane proteins.

Entities:  

Keywords:  Cryoelectron microscopy; Lipid environment; Membrane proteins; Single particle analysis

Year:  2017        PMID: 29256118      PMCID: PMC5899730          DOI: 10.1007/s12551-017-0371-6

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  107 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  Subnanometre-resolution electron cryomicroscopy structure of a heterodimeric ABC exporter.

Authors:  JungMin Kim; Shenping Wu; Thomas M Tomasiak; Claudia Mergel; Michael B Winter; Sebastian B Stiller; Yaneth Robles-Colmanares; Robert M Stroud; Robert Tampé; Charles S Craik; Yifan Cheng
Journal:  Nature       Date:  2014-11-02       Impact factor: 49.962

3.  Reconstitution of the Cytb5-CytP450 Complex in Nanodiscs for Structural Studies using NMR Spectroscopy.

Authors:  Meng Zhang; Rui Huang; Rose Ackermann; Sang-Choul Im; Lucy Waskell; Anna Schwendeman; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2016-02-29       Impact factor: 15.336

Review 4.  Cryo-EM structures of human γ-secretase.

Authors:  Guanghui Yang; Rui Zhou; Yigong Shi
Journal:  Curr Opin Struct Biol       Date:  2017-07-17       Impact factor: 6.809

5.  Structure of the Human Lipid Exporter ABCA1.

Authors:  Hongwu Qian; Xin Zhao; Pingping Cao; Jianlin Lei; Nieng Yan; Xin Gong
Journal:  Cell       Date:  2017-06-08       Impact factor: 41.582

Review 6.  The systematic analysis of protein-lipid interactions comes of age.

Authors:  Antoine-Emmanuel Saliba; Ivana Vonkova; Anne-Claude Gavin
Journal:  Nat Rev Mol Cell Biol       Date:  2015-10-28       Impact factor: 94.444

7.  Statistical modeling and removal of lipid membrane projections for cryo-EM structure determination of reconstituted membrane proteins.

Authors:  Katrine Hommelhoff Jensen; Sami Sebastian Brandt; Hideki Shigematsu; Fred J Sigworth
Journal:  J Struct Biol       Date:  2016-02-01       Impact factor: 2.867

8.  Three-dimensional structure of human γ-secretase.

Authors:  Peilong Lu; Xiao-Chen Bai; Dan Ma; Tian Xie; Chuangye Yan; Linfeng Sun; Guanghui Yang; Yanyu Zhao; Rui Zhou; Sjors H W Scheres; Yigong Shi
Journal:  Nature       Date:  2014-06-29       Impact factor: 49.962

9.  Structure of the voltage-gated two-pore channel TPC1 from Arabidopsis thaliana.

Authors:  Jiangtao Guo; Weizhong Zeng; Qingfeng Chen; Changkeun Lee; Liping Chen; Yi Yang; Chunlei Cang; Dejian Ren; Youxing Jiang
Journal:  Nature       Date:  2015-12-21       Impact factor: 49.962

10.  TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action.

Authors:  Yuan Gao; Erhu Cao; David Julius; Yifan Cheng
Journal:  Nature       Date:  2016-05-18       Impact factor: 49.962

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  7 in total

1.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

2.  Foreword to 'Multiscale structural biology: biophysical principles and mechanisms underlying the action of bio-nanomachines', a special issue in Honour of Fumio Arisaka's 70th birthday.

Authors:  Damien Hall; Junichi Takagi; Haruki Nakamura
Journal:  Biophys Rev       Date:  2018-03-02

Review 3.  Dawning of a new era in TRP channel structural biology by cryo-electron microscopy.

Authors:  M Gregor Madej; Christine M Ziegler
Journal:  Pflugers Arch       Date:  2018-01-17       Impact factor: 3.657

Review 4.  Membrane mimetic systems in CryoEM: keeping membrane proteins in their native environment.

Authors:  Henriette E Autzen; David Julius; Yifan Cheng
Journal:  Curr Opin Struct Biol       Date:  2019-07-03       Impact factor: 6.809

5.  A 10-year meta-analysis of membrane protein structural biology: Detergents, membrane mimetics, and structure determination techniques.

Authors:  Brendon C Choy; Rosemary J Cater; Filippo Mancia; Edward E Pryor
Journal:  Biochim Biophys Acta Biomembr       Date:  2020-12-17       Impact factor: 3.747

Review 6.  Regulation of Membrane Calcium Transport Proteins by the Surrounding Lipid Environment.

Authors:  Louise Conrard; Donatienne Tyteca
Journal:  Biomolecules       Date:  2019-09-20

7.  The Det.Belt Server: A Tool to Visualize and Estimate Amphipathic Solvent Belts around Membrane Proteins.

Authors:  Veronica Zampieri; Cécile Hilpert; Mélanie Garnier; Yannick Gestin; Sébastien Delolme; Juliette Martin; Pierre Falson; Guillaume Launay; Vincent Chaptal
Journal:  Membranes (Basel)       Date:  2021-06-22
  7 in total

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