Literature DB >> 31279500

Membrane mimetic systems in CryoEM: keeping membrane proteins in their native environment.

Henriette E Autzen1, David Julius2, Yifan Cheng3.   

Abstract

Advances in electron microscopes, detectors and data processing algorithms have greatly facilitated the structural determination of many challenging integral membrane proteins that have been evasive to crystallization. These breakthroughs facilitate the application and development of various membrane protein solubilization approaches for structural studies, including reconstitution into lipid nanoparticles. In this review, we discuss various approaches for preparing transmembrane proteins for structural determination with single-particle electron cryo microscopy (cryoEM).
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 31279500      PMCID: PMC6778513          DOI: 10.1016/j.sbi.2019.05.022

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  57 in total

1.  Amphipols from A to Z.

Authors:  J-L Popot; T Althoff; D Bagnard; J-L Banères; P Bazzacco; E Billon-Denis; L J Catoire; P Champeil; D Charvolin; M J Cocco; G Crémel; T Dahmane; L M de la Maza; C Ebel; F Gabel; F Giusti; Y Gohon; E Goormaghtigh; E Guittet; J H Kleinschmidt; W Kühlbrandt; C Le Bon; K L Martinez; M Picard; B Pucci; J N Sachs; C Tribet; C van Heijenoort; F Wien; F Zito; M Zoonens
Journal:  Annu Rev Biophys       Date:  2011       Impact factor: 12.981

2.  Structure and activity of lipid bilayer within a membrane-protein transporter.

Authors:  Weihua Qiu; Ziao Fu; Guoyan G Xu; Robert A Grassucci; Yan Zhang; Joachim Frank; Wayne A Hendrickson; Youzhong Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-03       Impact factor: 11.205

3.  Structural basis for activation of voltage sensor domains in an ion channel TPC1.

Authors:  Alexander F Kintzer; Evan M Green; Pawel K Dominik; Michael Bridges; Jean-Paul Armache; Dawid Deneka; Sangwoo S Kim; Wayne Hubbell; Anthony A Kossiakoff; Yifan Cheng; Robert M Stroud
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-06       Impact factor: 11.205

4.  Formation of Lipid-Bilayer Nanodiscs by Diisobutylene/Maleic Acid (DIBMA) Copolymer.

Authors:  Abraham Olusegun Oluwole; Johannes Klingler; Bartholomäus Danielczak; Jonathan Oyebamiji Babalola; Carolyn Vargas; Georg Pabst; Sandro Keller
Journal:  Langmuir       Date:  2017-12-06       Impact factor: 3.882

5.  Crystal structures of human saposins C andD: implications for lipid recognition and membrane interactions.

Authors:  Maxim Rossmann; Robert Schultz-Heienbrok; Joachim Behlke; Natascha Remmel; Claudia Alings; Konrad Sandhoff; Wolfram Saenger; Timm Maier
Journal:  Structure       Date:  2008-05       Impact factor: 5.006

6.  Cryo-EM structures of the TMEM16A calcium-activated chloride channel.

Authors:  Shangyu Dang; Shengjie Feng; Jason Tien; Christian J Peters; David Bulkley; Marco Lolicato; Jianhua Zhao; Kathrin Zuberbühler; Wenlei Ye; Lijun Qi; Tingxu Chen; Charles S Craik; Yuh Nung Jan; Daniel L Minor; Yifan Cheng; Lily Yeh Jan
Journal:  Nature       Date:  2017-12-13       Impact factor: 49.962

7.  An acid-compatible co-polymer for the solubilization of membranes and proteins into lipid bilayer-containing nanoparticles.

Authors:  Stephen C L Hall; Cecilia Tognoloni; Jack Charlton; Éilís C Bragginton; Alice J Rothnie; Pooja Sridhar; Mark Wheatley; Timothy J Knowles; Thomas Arnold; Karen J Edler; Tim R Dafforn
Journal:  Nanoscale       Date:  2018-06-07       Impact factor: 7.790

8.  A saposin-lipoprotein nanoparticle system for membrane proteins.

Authors:  Jens Frauenfeld; Robin Löving; Jean-Paul Armache; Andreas F-P Sonnen; Fatma Guettou; Per Moberg; Lin Zhu; Caroline Jegerschöld; Ali Flayhan; John A G Briggs; Henrik Garoff; Christian Löw; Yifan Cheng; Pär Nordlund
Journal:  Nat Methods       Date:  2016-03-07       Impact factor: 28.547

9.  Structure of mammalian endolysosomal TRPML1 channel in nanodiscs.

Authors:  Qingfeng Chen; Ji She; Weizhong Zeng; Jiangtao Guo; Haoxing Xu; Xiao-Chen Bai; Youxing Jiang
Journal:  Nature       Date:  2017-10-11       Impact factor: 49.962

10.  Cryo-EM structure of a fungal mitochondrial calcium uniporter.

Authors:  Nam X Nguyen; Jean-Paul Armache; Changkeun Lee; Yi Yang; Weizhong Zeng; Vamsi K Mootha; Yifan Cheng; Xiao-Chen Bai; Youxing Jiang
Journal:  Nature       Date:  2018-07-11       Impact factor: 49.962

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  15 in total

1.  Programmable Nanodisc Patterning by DNA Origami.

Authors:  Zhao Zhang; Edwin R Chapman
Journal:  Nano Lett       Date:  2020-07-15       Impact factor: 11.189

Review 2.  The importance of the membrane for biophysical measurements.

Authors:  Dror S Chorev; Carol V Robinson
Journal:  Nat Chem Biol       Date:  2020-11-16       Impact factor: 15.040

Review 3.  Beyond history and "on a roll": The list of the most well-studied human protein structures and overall trends in the protein data bank.

Authors:  Zhen-Lu Li; Matthias Buck
Journal:  Protein Sci       Date:  2021-03-04       Impact factor: 6.725

4.  A 10-year meta-analysis of membrane protein structural biology: Detergents, membrane mimetics, and structure determination techniques.

Authors:  Brendon C Choy; Rosemary J Cater; Filippo Mancia; Edward E Pryor
Journal:  Biochim Biophys Acta Biomembr       Date:  2020-12-17       Impact factor: 3.747

Review 5.  Understanding the invisible hands of sample preparation for cryo-EM.

Authors:  Giulia Weissenberger; Rene J M Henderikx; Peter J Peters
Journal:  Nat Methods       Date:  2021-05-07       Impact factor: 47.990

6.  New approach for membrane protein reconstitution into peptidiscs and basis for their adaptability to different proteins.

Authors:  Gabriella Angiulli; Harveer Singh Dhupar; Hiroshi Suzuki; Irvinder Singh Wason; Franck Duong Van Hoa; Thomas Walz
Journal:  Elife       Date:  2020-03-03       Impact factor: 8.140

7.  Cryo-EM Structure of Mechanosensitive Channel YnaI Using SMA2000: Challenges and Opportunities.

Authors:  Claudio Catalano; Danya Ben-Hail; Weihua Qiu; Paul Blount; Amedee des Georges; Youzhong Guo
Journal:  Membranes (Basel)       Date:  2021-10-31

8.  Mechanism of gating and partial agonist action in the glycine receptor.

Authors:  Jie Yu; Hongtao Zhu; Remigijus Lape; Timo Greiner; Juan Du; Wei Lü; Lucia Sivilotti; Eric Gouaux
Journal:  Cell       Date:  2021-02-09       Impact factor: 41.582

9.  Cryo-EM structure of type 1 IP3R channel in a lipid bilayer.

Authors:  Mariah R Baker; Guizhen Fan; Alexander B Seryshev; Melina A Agosto; Matthew L Baker; Irina I Serysheva
Journal:  Commun Biol       Date:  2021-05-25

Review 10.  Lipid nanoparticle technologies for the study of G protein-coupled receptors in lipid environments.

Authors:  Steven Lavington; Anthony Watts
Journal:  Biophys Rev       Date:  2020-11-19
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