Literature DB >> 26507169

The systematic analysis of protein-lipid interactions comes of age.

Antoine-Emmanuel Saliba1, Ivana Vonkova2, Anne-Claude Gavin3.   

Abstract

Lipids tailor membrane identities and function as molecular hubs in all cellular processes. However, the ways in which lipids modulate protein function and structure are poorly understood and still require systematic investigation. In this Innovation article, we summarize pioneering technologies, including lipid-overlay assays, lipid pull-down assays, affinity-purification lipidomics and the liposome microarray-based assay (LiMA), that will enable protein-lipid interactions to be deciphered on a systems level. We discuss how these technologies can be applied to the charting of system-wide networks and to the development of new pharmaceutical strategies.

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Year:  2015        PMID: 26507169     DOI: 10.1038/nrm4080

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  86 in total

Review 1.  Mechanisms of membrane curvature sensing.

Authors:  Bruno Antonny
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

2.  Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae.

Authors:  Mohan Babu; James Vlasblom; Shuye Pu; Xinghua Guo; Chris Graham; Björn D M Bean; Helen E Burston; Franco J Vizeacoumar; Jamie Snider; Sadhna Phanse; Vincent Fong; Yuen Yi C Tam; Michael Davey; Olha Hnatshak; Navgeet Bajaj; Shamanta Chandran; Thanuja Punna; Constantine Christopolous; Victoria Wong; Analyn Yu; Gouqing Zhong; Joyce Li; Igor Stagljar; Elizabeth Conibear; Shoshana J Wodak; Andrew Emili; Jack F Greenblatt
Journal:  Nature       Date:  2012-09-02       Impact factor: 49.962

3.  Protein lipid overlay assay.

Authors:  Simon Dowler; Gursant Kular; Dario R Alessi
Journal:  Sci STKE       Date:  2002-04-23

Review 4.  Surface plasmon resonance in protein-membrane interactions.

Authors:  Mojca Besenicar; Peter Macek; Jeremy H Lakey; Gregor Anderluh
Journal:  Chem Phys Lipids       Date:  2006-03-20       Impact factor: 3.329

5.  Profiling lipid-protein interactions using nonquenched fluorescent liposomal nanovesicles and proteome microarrays.

Authors:  Kuan-Yi Lu; Sheng-Ce Tao; Tzu-Ching Yang; Yu-Hsuan Ho; Chia-Hsien Lee; Chen-Ching Lin; Hsueh-Fen Juan; Hsuan-Cheng Huang; Chin-Yu Yang; Ming-Shuo Chen; Yu-Yi Lin; Jin-Ying Lu; Heng Zhu; Chien-Sheng Chen
Journal:  Mol Cell Proteomics       Date:  2012-07-26       Impact factor: 5.911

Review 6.  Host targeting of virulence determinants and phosphoinositides in blood stage malaria parasites.

Authors:  Souvik Bhattacharjee; Robert V Stahelin; Kasturi Haldar
Journal:  Trends Parasitol       Date:  2012-10-16

7.  Lipid directed intrinsic membrane protein segregation.

Authors:  Jesper S Hansen; James R Thompson; Claus Hélix-Nielsen; Noah Malmstadt
Journal:  J Am Chem Soc       Date:  2013-11-11       Impact factor: 15.419

8.  A quantitative liposome microarray to systematically characterize protein-lipid interactions.

Authors:  Antoine-Emmanuel Saliba; Ivana Vonkova; Stefano Ceschia; Greg M Findlay; Kenji Maeda; Christian Tischer; Samy Deghou; Vera van Noort; Peer Bork; Tony Pawson; Jan Ellenberg; Anne-Claude Gavin
Journal:  Nat Methods       Date:  2013-11-24       Impact factor: 28.547

9.  A Conserved Circular Network of Coregulated Lipids Modulates Innate Immune Responses.

Authors:  Marielle S Köberlin; Berend Snijder; Leonhard X Heinz; Christoph L Baumann; Astrid Fauster; Gregory I Vladimer; Anne-Claude Gavin; Giulio Superti-Furga
Journal:  Cell       Date:  2015-06-18       Impact factor: 41.582

10.  Mass spectrometry of membrane transporters reveals subunit stoichiometry and interactions.

Authors:  Nelson P Barrera; Shoshanna C Isaacson; Min Zhou; Vassiliy N Bavro; Alex Welch; Theresia A Schaedler; Markus A Seeger; Ricardo Núñez Miguel; Vladimir M Korkhov; Hendrik W van Veen; Henrietta Venter; Adrian R Walmsley; Christopher G Tate; Carol V Robinson
Journal:  Nat Methods       Date:  2009-07-05       Impact factor: 28.547

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  49 in total

1.  Unsaturation Elements and Other Modifications of Phospholipids in Bacteria: New Insight from Ultraviolet Photodissociation Mass Spectrometry.

Authors:  Molly S Blevins; Virginia K James; Carmen M Herrera; Alexandria B Purcell; M Stephen Trent; Jennifer S Brodbelt
Journal:  Anal Chem       Date:  2020-06-16       Impact factor: 6.986

Review 2.  Building membrane nanopores.

Authors:  Stefan Howorka
Journal:  Nat Nanotechnol       Date:  2017-07-06       Impact factor: 39.213

3.  Lipid and Protein Transfer between Nanolipoprotein Particles and Supported Lipid Bilayers.

Authors:  Amanda T Dang; Wei He; Daniela B Ivey; Matthew A Coleman; Tonya L Kuhl
Journal:  Langmuir       Date:  2019-09-06       Impact factor: 3.882

4.  Gram-negative trimeric porins have specific LPS binding sites that are essential for porin biogenesis.

Authors:  Wanatchaporn Arunmanee; Monisha Pathania; Alexandra S Solovyova; Anton P Le Brun; Helen Ridley; Arnaud Baslé; Bert van den Berg; Jeremy H Lakey
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-04       Impact factor: 11.205

5.  Primary and Secondary Binding of Exenatide to Liposomes.

Authors:  Anja Stulz; Michaela Breitsamer; Gerhard Winter; Heiko Heerklotz
Journal:  Biophys J       Date:  2020-01-03       Impact factor: 4.033

Review 6.  The two sides of a lipid-protein story.

Authors:  Luis G Mansor Basso; Luis F Santos Mendes; Antonio J Costa-Filho
Journal:  Biophys Rev       Date:  2016-04-30

7.  Solution NMR Provides New Insight into Lipid-Protein Interaction.

Authors:  Iga Kucharska; Lukas K Tamm
Journal:  Biochemistry       Date:  2017-06-01       Impact factor: 3.162

Review 8.  A systems approach to infectious disease.

Authors:  Manon Eckhardt; Judd F Hultquist; Robyn M Kaake; Ruth Hüttenhain; Nevan J Krogan
Journal:  Nat Rev Genet       Date:  2020-02-14       Impact factor: 53.242

Review 9.  Quantitative imaging of lipid droplets in single cells.

Authors:  Anushka Gupta; Gabriel F Dorlhiac; Aaron M Streets
Journal:  Analyst       Date:  2019-01-28       Impact factor: 4.616

10.  A novel approach for measuring sphingosine-1-phosphate and lysophosphatidic acid binding to carrier proteins using monoclonal antibodies and the Kinetic Exclusion Assay.

Authors:  Jonathan K Fleming; Thomas R Glass; Steve J Lackie; Jonathan M Wojciak
Journal:  J Lipid Res       Date:  2016-07-21       Impact factor: 5.922

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