Literature DB >> 35994119

Orchestrating copper binding: structure and variations on the cupredoxin fold.

Jing Guo1, Oriana S Fisher2.   

Abstract

A large number of copper binding proteins coordinate metal ions using a shared three-dimensional fold called the cupredoxin domain. This domain was originally identified in Type 1 "blue copper" centers but has since proven to be a common domain architecture within an increasingly large and diverse group of copper binding domains. The cupredoxin fold has a number of qualities that make it ideal for coordinating Cu ions for purposes including electron transfer, enzyme catalysis, assembly of other copper sites, and copper sequestration. The structural core does not undergo major conformational changes upon metal binding, but variations within the coordination environment of the metal site confer a range of Cu-binding affinities, reduction potentials, and spectroscopic properties. Here, we discuss these proteins from a structural perspective, examining how variations within the overall cupredoxin fold and metal binding sites are linked to distinct spectroscopic properties and biological functions. Expanding far beyond the blue copper proteins, cupredoxin domains are used by a growing number of proteins and enzymes as a means of binding copper ions, with many more likely remaining to be identified.
© 2022. The Author(s), under exclusive licence to Society for Biological Inorganic Chemistry (SBIC).

Entities:  

Keywords:  Copper; Cupredoxin; Domain; Protein structure

Mesh:

Substances:

Year:  2022        PMID: 35994119     DOI: 10.1007/s00775-022-01955-2

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.862


  86 in total

1.  Flexibility of the metal-binding region in apo-cupredoxins.

Authors:  María-Eugenia Zaballa; Luciano A Abriata; Antonio Donaire; Alejandro J Vila
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

2.  Occurrence of copper proteins through the three domains of life: a bioinformatic approach.

Authors:  Claudia Andreini; Lucia Banci; Ivano Bertini; Antonio Rosato
Journal:  J Proteome Res       Date:  2007-11-08       Impact factor: 4.466

3.  Similarity of three-dimensional structure between the immunoglobulin domain and the copper, zinc superoxide dismutase subunit.

Authors:  J S Richardson; D C Richardson; K A Thomas; E W Silverton; D R Davies
Journal:  J Mol Biol       Date:  1976-04-05       Impact factor: 5.469

4.  Structural comparison of cupredoxin domains: domain recycling to construct proteins with novel functions.

Authors:  M E Murphy; P F Lindley; E T Adman
Journal:  Protein Sci       Date:  1997-04       Impact factor: 6.725

5.  Copper proteomes, phylogenetics and evolution.

Authors:  Leonardo Decaria; Ivano Bertini; Robert J P Williams
Journal:  Metallomics       Date:  2010-11-01       Impact factor: 4.526

Review 6.  Copper protein structures.

Authors:  E T Adman
Journal:  Adv Protein Chem       Date:  1991

7.  Experimental evidence for a link among cupredoxins: red, blue, and purple copper transformations in nitrous oxide reductase.

Authors:  Masha G Savelieff; Tiffany D Wilson; Youssef Elias; Mark J Nilges; Dewain K Garner; Yi Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-05       Impact factor: 11.205

8.  Identification of novel cupredoxin homologs using overlapped conserved residues based approach.

Authors:  Amit Goyal; Bharat Madan; Kyu-Suk Hwang; Sun-Gu Lee
Journal:  J Microbiol Biotechnol       Date:  2015-01       Impact factor: 2.351

Review 9.  Insights from 20 years of bacterial genome sequencing.

Authors:  Miriam Land; Loren Hauser; Se-Ran Jun; Intawat Nookaew; Michael R Leuze; Tae-Hyuk Ahn; Tatiana Karpinets; Ole Lund; Guruprased Kora; Trudy Wassenaar; Suresh Poudel; David W Ussery
Journal:  Funct Integr Genomics       Date:  2015-02-27       Impact factor: 3.410

10.  The Pfam protein families database in 2019.

Authors:  Sara El-Gebali; Jaina Mistry; Alex Bateman; Sean R Eddy; Aurélien Luciani; Simon C Potter; Matloob Qureshi; Lorna J Richardson; Gustavo A Salazar; Alfredo Smart; Erik L L Sonnhammer; Layla Hirsh; Lisanna Paladin; Damiano Piovesan; Silvio C E Tosatto; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

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