Thomas L C Jansen1. 1. Zernike Institute for Advanced Materials, University of Groningen , Nijenborgh 4, 9747 AG Groningen, The Netherlands.
Abstract
In this paper, we introduce two simple quantum dynamics methods. One is based on the popular surface-hopping method, and the other is based on rescaling of the propagation on the bath ground-state potential surface. The first method is special, as it avoids specific feedback from the simulated quantum system to the bath and can be applied for precalculated classical trajectories. It is based on the equipartition theorem to determine if hops between different potential energy surfaces are allowed. By comparing with the formally exact Hierarchical Equations Of Motion approach for four model systems we find that the method generally approximates the quantum dynamics toward thermal equilibrium very well. The second method is based on rescaling of the nonadiabatic coupling and also neglect the effect of the state of the quantum system on the bath. By the nature of the approximations, they cannot reproduce the effect of bath relaxation following excitation. However, the methods are both computationally more tractable than the conventional fewest switches surface hopping, and we foresee that the methods will be powerful for simulations of quantum dynamics in systems with complex bath dynamics, where the system-bath coupling is not too strong compared to the thermal energy.
In this paper, we introduce two simple quantum dynamics methods. One is based on the popular surface-hopping method, and the other is based on rescaling of the propagation on the bath ground-state potential surface. The first method is special, as it avoids specific feedback from the simulated quantum system to the bath and can be applied for precalculated classical trajectories. It is based on the equipartition theorem to determine if hops between different potential energy surfaces are allowed. By comparing with the formally exact Hierarchical Equations Of Motion approach for four model systems we find that the method generally approximates the quantum dynamics toward thermal equilibrium very well. The second method is based on rescaling of the nonadiabatic coupling and also neglect the effect of the state of the quantum system on the bath. By the nature of the approximations, they cannot reproduce the effect of bath relaxation following excitation. However, the methods are both computationally more tractable than the conventional fewest switches surface hopping, and we foresee that the methods will be powerful for simulations of quantum dynamics in systems with complex bath dynamics, where the system-bath coupling is not too strong compared to the thermal energy.
Dissipation in quantum
systems is a phenomenon playing a role in
many physics and chemistry problems. An accurate description of quantum
dynamics is thus crucial for understanding many physical and chemical
phenomena. Such phenomena include photosynthesis, vibrational energy
redistribution, and photoisomerizations. A popular approach to this
problem is rooted in coupling a system described by a quantum mechanical
approach with a bath described at a more approximate level of the
theory.[1,2] Since Ehrenfest proposed the first such
approach[3] numerous alternatives have been
proposed. The Hierarchical Equations Of Motion (HEOM) theory[4−6] and the QUAsiadiabatic Propagator Path Integral (QUAPI) method[7] stand out as two formally exact methods. These
methods, while accurate, are computationally prohibitively demanding
as the size of the quantum system and bath increase. A popular alternative
is the Surface Hopping family of approximations[8] with the so-called Fewest Switches Surface Hopping (FSSH)
as proposed by Tully[9,10] as the most common approximation.
Numerous other approximate methods for quantum dynamics in open systems
have been developed and tested.[1,11,12,12−37] The key motivation for this paper is to develop simple approximate
quantum dynamics algorithms that allow treating sizable and complex
systems, for which the formally exact methods are computationally
too expensive or too complicated to formulate.In the following,
a brief overview of the most popular of the currently
existing methods for calculating quantum dynamics is given. Currently,
one of the most popular quantum dynamics approaches is the HEOM. It
was developed for different types of bath coordinates including overdamped[5,6] and underdamped[37] Brownian oscillator
modes. Combinations of essentially arbitrary Gaussian baths can be
modeled. However, for every added bath mode the computational cost
of the HEOM increases. Significant work has been made to make this
method computationally more tractable including approximations made
in the hierarchical expansion used to treat the bath[38] and development of efficient GPU codes.[39] The key limitations of this method are, thus, that it scales
very unfavorably with systems size and that it is limited to Gaussian
bath dynamics. The bath is treated in a stochastic manner, and the
bath density of states must be preparametrized.For weakly coupled
systems perturbative approaches for quantum
dynamics as that developed by Redfield[40] and modifications of this[41] have become
popular. A perturbative approach developed by Sumi is based on a generalization
of Förster energy transfer to multichromophoric systems.[42−45] These approaches are computationally rather cheap but limited by
their perturbative nature and not applicable to degenerate systems,
where the energy gap between the donor and acceptor become small compared
to the coupling in which the perturbation is made. These methods further
build on the assumption of Gaussian dynamics and a stochastic description
of the bath.The Surface Hopping approach proposed by Tully[9,10] is
simply a postulated solution to solve quantum dynamics even recent
attempts have been at least partially successful in a formal derivation.[46] In essence, the system–bath interaction
is treated in such a way that the bath at all times only feels a force
from a specific state of the system, and through carefully chosen
stochastic “hops” between these states trajectories
are obtained, where correlations between bath and system are preserved.
From our perspective, one of the powerful points of Surface Hopping
is that it allows the calculation of quantum dynamics using bath trajectories.
It is therefore not limited to Gaussian dynamics, and it can describe
systems with very anharmonic bath modes and systems, where the notion
of a bath density of states is not valid. This also allows a quite
simple analysis of the correlation between bath and system dynamics.[47] Still, because of the nature of the method,
quite a few fundamental questions on the application and details of
how to apply the method exist, and many adapted versions of the method
have emerged.[8,48−54] The method has still proven useful for studying many chemical problems,
and it has, for example, been implemented in the Newton-X software
package.[55] A particular drawback of the
method is that it requires the simultaneous solution of the explicit
quantum and classical dynamics, which for large systems can be rather
time-consuming.Alternatively, the quantum dynamics can be propagated
on the bath
potential energy surface corresponding to the ground state,[56] equivalent to Ehrenfest dynamics without quantum
feedback.[3] This type of approach has recently
been implemented to model linear absorption and two-dimensional spectroscopy
with quite some success[57−62] and will here be denoted the Numerical Integration of the Schrödinger
Equation (NISE) approach. An important advantage of the NISE method
is that it can be applied to systems with arbitrary bath dynamics,
including baths with multiple underdamped and non-Gaussian[63−66] modes without any additional computational cost of the quantum propagation.
As long as a trajectory of a time-dependent Hamiltonian can be constructed
the method can be applied. Furthermore, non-Condon effects[67] including effects of simple rotations can be
trivially included in spectral calculations.[68] The method scales very favorably with system size,[60] and it is applicable to simulate spectroscopic observables
of systems consisting of hundreds of coupled chromophores[69−73] and treat more than 1 × 105 coupled quantum states
needed to simulate two-dimensional infrared and sum-frequency generation
spectra of proteins.[60,74] The obvious drawbacks are that
as in this method the quantum system feels the classical bath the
propagation of the classical bath does not depend on the state of
the quantum system. The quantum dynamics thermalize to an infinite
temperature and bath relaxation, for example, causing spectral Stokes
shifts are absent.[75]The goal of
the present paper is to develop computationally tractable
methods for approximate quantum propagation at finite temperatures.
The methods should allow the use of arbitrary bath dynamics, be applicable
to large systems, and have approximately correct thermalization. For
the first approach, the basic idea that will be elaborated on in the Methods Section is that from the equipartition theorem
we know how much thermal energy is available on average in each bath
coordinate. We will use this knowledge to determine when a hop is
allowed in a Surface Hopping algorithm. We will neglect any feedback
of the quantum system on the classical bath allowing the use of precalculated
classical trajectories. A key assumption for this approximation to
apply is that the dissipation of energy within the classical system
is faster than the frequency of attempted surface hops in the Surface
Hopping algorithm. This approximation will potentially solve the thermalization
problem but obviously not the bath relaxation problem, for example,
leading to Stokes shifts. We will denote the new Surface Hopping approach
the Simple Equipartition Surface Hopping (SESH) approach. While the
number of Surface Hopping approximations is very large[8] to the best of our knowledge this approximation has not
been presented before. We further define an adapted NISE approach
using simple rescaling of the nonadiabatic couplings. This approach
will be denoted the thermalized numerical integration of the Schrödinger
equation approach (TNISE). We foresee that such methods may be particularly
useful for calculating two-dimensional infrared[76] (2DIR) and two-dimensional UV/visible[77] (2DUVvis) spectra for large systems, which explicitly depend
and report on the quantum dynamics of the excited states. Here we
will test the new models against the exact HEOM method for coupled
two-level systems, which has become a standard test for approximate
quantum propagation methods.[5,12,15,21,54]The outline of the remainder of this paper is as follows.
In the Methods Section, we will briefly discuss
the basic
coupled two-level models used for testing the new approximations,
the HEOM and NISE implementations used for comparison will be summarized,
and the new SESH and TNISE methods will be described in detail. In
the Results Section, we will compare results
for these methods for four different situations mimicking typical
problems, where the new methods may be applicable. These are two problems
for vibrational dynamics and two problems for electronic excitations.
Finally, the conclusions will be presented along with a discussion
of the potential applications of the new methods.
Methods
We will consider a simple system of coupled two-level systems described
by the HamiltonianHere, the wave functions for the
two sites
are |1⟩ and |2⟩, while the difference in the energy
between the two sites is ΔE. As the dynamics of the
quantum system does not depend on the absolute energy of the sites
the average energy of site 1 was set to 0. The site energies fluctuate
depending on the bath degrees of freedom, x1, and x2, with a coupling constant, σ.
The two sites are coupled with coupling constant J, which for simplicity is assumed constant. The model and the involved
parameters are also illustrated in Figure .
Figure 1
Dimer of two-level systems is illustrated with
the energy gap ΔE between the excitations, the coupling
between the two sites J, and the bath-induced energy
fluctuation magnitude σ.
Dimer of two-level systems is illustrated with
the energy gap ΔE between the excitations, the coupling
between the two sites J, and the bath-induced energy
fluctuation magnitude σ.The bath degrees of freedom were treated as an overdamped
Brownian
oscillator characterized by a Gaussian distribution of the bath coordinates x1 and x2. The connected
frequency time-correlation function is C(t) = ⟨σx(t)σx(0)⟩= σ2 exp(−t/τ)δ = 2kBTλ exp(−tγ)δ. Here i and j enumerate the sites. The memory
can be characterized by either of the complementary parameters τ
or γ, and the fluctuation magnitude can be characterized by
either σ or temperature and reorganization energy λ. The
correlation function is illustrated in Figure . For the surface hopping and NISE simulation,
trajectories of the fluctuating bath coordinates were constructed
using a simple stochastic approach outlined in ref (68) ensuring the correct overdamped
Brownian oscillator behavior. The Brownian oscillator dynamics is
formally a solution to the equation of motion:where
the magnitude of the fluctuations of
the white-noise random force term f(t) determines the magnitude of the fluctuations in the coordinate x.[78,79] While we will use this model in the present paper to allow comparison
with the HEOM method, it is important to realize that presented new
methods do not depend on how the fluctuating frequencies are generated.
The bath dynamics can thus be represented by virtually any stochastic
or statistical model or may arise from frequency models[80−86] connected with molecular dynamics simulations.For the HEOM
implementation, we followed ref (5) and validated the implementation
by comparing with the data presented in that paper. That implementation
neglected fast fluctuation effects resulting in contributions from
Matsubara modes at low temperature and is only valid when ℏ/τ< kBT. The implementation of the
NISE procedure followed ref (17), while the Surface Hopping implementation followed ref (87) with the specific changes
outlined below.In the SESH method, a primary (ϕP(t)) and an auxiliary (ϕA(t)) wave
function are used. Initially, the two are identical, and they are
chosen to be identical to one of the instantaneous eigenstates of
the Hamiltonian. The time-dependent Schrödinger equation determines
the dynamics of the primary wave function. Therefore, it fulfills
the equationTo solve
this, the primary wave function is
propagated in the diabatic site basis avoiding diverging nonadiabatic
couplings, which may arise if propagating in the instantaneous adiabatic
basis. For this propagation short time steps Δt are used assuming that the Hamiltonian can then be considered constant
resulting in the wave function update:Here defining the time-evolution operator U(t + Δt,t). The auxiliary
wave function is propagated by first assuming
an adiabatic change. As a first step, the auxiliary wave function
at time t + Δt is chosen as
the instantaneous eigenstate ϕE(t + Δt) of the Hamiltonian at time t + Δt maximizing the overlap with the auxiliary wave function
at time t. Then the possibility of a surface hop
is considered following the standard FSSH protocol. A hopping probability
for transferring to another instantaneous eigenstate ϕE(t + Δt) is given byIf the probability is negative it
is nullified.
Then a random number η between zero and one is generated, and
a hop is executed to the state j ifThis is all according
to the FSSH protocol.
One of the key differences with the new approximation arises when
a hop is accepted according to this criterion. In the FSSH protocol,
a check will be performed if sufficient kinetic energy is available
in the bath mode along the nonadiabatic coupling vector, and in the
case of a jump the energy difference connected with the jump will
be exchanged with the bath. In this approach, we deliberately want
to use a pregenerated bath trajectory. Alternatively, we use the assumption
that the kinetic energy available in any given bath mode is given
by the equipartition theorem. We further assume that the energy dissipation
in the bath is faster than the time between hops in the system. The
kinetic energy available for hops can, thus, be considered to be independent
of any previous successful hops. A second random number, ξ,
is, thus, generated by taking the absolute value of a Gaussian distribution
with standard deviation of kBT mimicking a random kinetic energy. If the kinetic energy required
for moving from the instantaneous eigenstate corresponding to the
present auxiliary state to the state ϕE(t +
Δt) is smaller than ξ the hop is accepted,
and the auxiliary wave function for the time t +
Δt is changed to ϕE(t + Δt). In contrast to the FSSH algorithm
nothing is done to the bath trajectory, neither in the case of an
accepted nor in the case of a refused hop.[49] This is obviously an approximation that will fail in the cases of
numerous successive upward hops that all require energy from the same
bath mode. The other part of the present approximation is the neglect
of the force exerted by the quantum system on the classical bath coordinates x at every time step as given by F(t) = ⟨ϕA(t)|dH/dx|ϕA(t)⟩. The consequence
of neglecting this force is the loss of the inclusion of a Stokes
shift induced by the bath. In contrast to the FSSH surface hopping
the SESH algorithm outlined above does not ensure conservation of
energy of the whole system.We further develop an approximate
thermalizing version of the NISE
approach. The starting point for this is the equation for propagating
the wave function in the adiabatic basis:[58]where c is the wave function coefficient
for each adiabatic basis
function (instantaneous eigenstate), ϵ is the eigenvalue corresponding to that adiabatic basis function,
and S is the nonadiabatic
coupling, which is defined S ≡ ⟨ϕ̃(t)|ϕ̃̇(t)⟩. In this formulation of the nonadiabatic
dynamics on the ground-state potential energy surface, the meaning
of the two terms is quite simple. The first term accounts for the
phase acquired with time for each individual instantaneous eigenstate,
while the nonadiabatic coupling accounts for population transfer between
these states. We know that the predicted equilibrium populations will
be equal according to the high-temperature limit in this case, and
to correct for this incorrect thermalization we redefine the nonadiabatic
coupling. For simplicity, we define the propagation in matrix form:Here ψ̃(t) is
the wave function in the adiabatic basis, the matrix Ũ(t + Δt,t) is the adiabatic propagation, and S(t + Δt,t) is the nonadiabatic
propagation, which can be formulated in terms of the eigenvector coefficient
matrices C at times t + Δt and t. We now redefine the nonadiabatic
matrix with a temperature correction:In
this way transfer requiring energy from
the bath is slowed, and transfer dumping energy to the bath is enhanced.
The motivation of the scaling is that downward transfer should be
faster than upward transfer with a ratio determined by the Boltzmann
factor to reach equilibrium. The scaling factor is motivated by making
the scaling factor mathematically equivalent for upward and downward
transfer. The factor four in the exponent arise as the scaling is
for the wave function propagation and as the populations are proportional
to the square of the wave function the scaling of the population transfer
will include a factor 2. This is obviously an ad hoc choice of scaling
similar in spirit to previous methods.[15]N is chosen to normalize
the problem such that N2 + ∑|S(t + Δt,t)|2 = 1. Care must be made that if the order
of the eigenstates is swapped between two successive steps the new
eigenstates are matched to maximize the overlap. Despite the normalization
performed by rescaling the diagonal elements of the nonadiabatic coupling
matrix the matrix is not unitary anymore, and the wave functions are
renormalized after every propagation time step. When the temperature
is infinite the correction term will become unity, and the normal
NISE approach will be recovered.In summary, we expect that
the new approximations may work well
when the reorganization energy is small compared to the temperature
(λ ≪ kBT), where it may approximate the thermal relaxation well. In this
case, the Stokes shift caused by the coupling with the bath is significantly
low compared to the witdh of the frequency distributions of the site
energies and the effect on the population transfer, thus, negligible.
In contrast the simpler NISE method neglects both the thermalization
and the Stokes shift. Still, this method has proven quite successful
for predicting vibrational energy redistribution, for example, in
the OH-stretch manifold of water.[88,89]
Results
The new method was tested for different parameters typical for
realistic systems presented in Table . For each system, we calculated the time-dependent
probability that a population created in the highest excited state
was still in that state at a later time. For the HEOM the system Hamiltonian
was used to determine the eigenstates used for this analysis, while
in the SESH and NISE methods the instantaneous eigenstates were used
for this analysis. For the HEOM and NISE further, the probability
of starting at the site with the highest site energy and still being
there at a later time was calculated as well. As the SESH formulated
here only applies to the transfer between instantaneous eigenstates
the site transfer could not be obtained. For the present simulations,
the time step was set to 10 fs both when solving the HEOM, NISE, and
SESH. For TNISE a smaller time step of 2 fs was employed to guarantee
the correct identification of the eigenstates in successive time steps.
For the hierarchy, a depth of five was found to be sufficient. For
the NISE and SESH methods, 10 000 disorder realizations of
the stochastic bath were used. All simulations were performed at T = 300 K unless explicitly stated.
Table 1
Parameters
Selecteda for Two-Level Pair Systems Designed
to Mimic Realistic Systems
system
J (cm–1)
ΔE (cm–1)
σ (cm–1)
τ (fs)
water in MeCN[68]
–43
0
60
50
amide I/amide II[92]
36
70
25
50
FMO[105]
–106
140
150
140
LH2[123]
47
300
100
100
References are given to papers
on which these parameters are based. The temperature was set to T = 300 K corresponding to a thermal energy of 208.5 cm–1.
References are given to papers
on which these parameters are based. The temperature was set to T = 300 K corresponding to a thermal energy of 208.5 cm–1.We first
tested the SESH for parameters similar to those found
for the OH-stretch vibrations of water in acetonitrile.[68] In this system, the two local OH-stretch vibrations
are on average identical, and the coupling leads to a low-frequency
symmetric mode and a high-frequency asymmetric mode (Δ < |J| < σ < kBT). The population dynamics
of an initially excited asymmetric mode is followed in Figure a. On the one hand, for the
NISE, TNISE, and SESH methods, the population of the instantaneous
eigenstate is provided, while for the HEOM the population of the average
eigenstate is provided, as this method is intrinsically treating the
whole ensemble and does not allow looking at the instantaneous eigenstates.
The SESH on the other hand at least as implemented here only allows
excitation of the instantaneous eigenstates. Despite this difference,
the TNISE, SESH, and HEOM populations are very similar, and they decay
to the same final thermalized population, while the NISE method exhibits
slower dynamics and decays to the high-temperature approximation 50%
population. At short times the TNISE and SESH decay a bit faster than
the HEOM. This is here attributed to the difference between the instantaneous
and average eigenstates. In the site representation presented for
the NISE, TNISE, and HEOM in Figure b the quantum dynamics is essentially identical. The
small differences observed here between the NISE and HEOM methods
are well in line with the fact that FTIR and 2DIR spectra for this
system match the experimental observations for this system when modeled
with the NISE approach.[63] This is not so
surprising, considering that both the reorganization energy and the
energy gap between the eigenstates are smaller than the thermal energy.
Figure 2
(a) The
population of the highest (instantaneous) eigenstate following
excitation of that state for the waterlike parameters according to
the HEOM (red), NISE (blue), SESH (green), and TNISE (dashed black)
approaches. (b) The population of one of the two sites following initial
excitation of that site according to the HEOM (red), NISE (blue),
and TNISE (dashed black) approaches.
(a) The
population of the highest (instantaneous) eigenstate following
excitation of that state for the waterlike parameters according to
the HEOM (red), NISE (blue), SESH (green), and TNISE (dashed black)
approaches. (b) The population of one of the two sites following initial
excitation of that site according to the HEOM (red), NISE (blue),
and TNISE (dashed black) approaches.We proceeded to model a system with an amide I mode coupled
with
an amide II mode. This mimics the most important relaxation channel
from the amide I band of proteins[76,90] and, in particular,
of the N-methylacetamide molecule[35,76,91−98] used for parametrizing and benchmarking protein models. The two
amide modes are separated by ∼70 cm–1, which
is still smaller than the thermal energy at 300 K (σ < |J| < ΔE < kBT). The population of the amide I eigenstate
following initial excitation of this mode is presented in Figure a, and the results
from the three methods are quite similar. Again the NISE population
approach is at 50% occupation at long times as expected, while the
HEOM goes to 40% reflecting the higher energy of the amide I mode.
The initial decay of the SESH is faster than for the other methods,
as was the case for the water example. The population in the long
time limit is slightly higher than in the HEOM approach but considerably
better than the NISE prediction. For the TNISE approach, the transfer
is essentially identical to that observed in the HEOM approach. The
population dynamics following the excitation of the isolated amide
I vibration is shown in Figure b. Coherent vibrations between the two amide modes in the
“site” basis are observed for both HEOM, TNISE, and
NISE. In this case, the site basis corresponds essentially to the
CO-stretch for amide I and CN-stretch for amide II.[91] In contrast to water, the predictions from NISE and HEOM
start to deviate after ∼500 fs, where the HEOM begin to decay
toward the correct thermal equilibrium. The TNISE, in this case, follows
the HEOM. Again the relatively small deviation between the different
methods supports the success of the NISE method in predicting FTIR
and 2DIR spectra of coupled amide I-amide II systems;[99] however, it is also clear that the new SESH and TNISE methods
would provide results in better agreement with the exact HEOM approach.
Figure 3
(a) The
population of the amide I (instantaneous) eigenstate following
excitation of that state for the amide-like parameters according to
the HEOM (red), NISE (blue), SESH (green), and TNISE (dashed black)
approaches. (b) The population of the isolated amide I vibration following
initial excitation of that site according to the HEOM (red), NISE
(blue), and TNISE (dashed black) approaches.
(a) The
population of the amide I (instantaneous) eigenstate following
excitation of that state for the amide-like parameters according to
the HEOM (red), NISE (blue), SESH (green), and TNISE (dashed black)
approaches. (b) The population of the isolated amide I vibration following
initial excitation of that site according to the HEOM (red), NISE
(blue), and TNISE (dashed black) approaches.The energy differences between electronic states are larger
than
those of vibrational states, and more significant deviations are expected
in such cases. The next system to examine is, thus, a dimer that mimics
the states in the much-studied Fenna–Matthews–Olson (FMO) complex.[82,83,100−110] In this case, we used a dimer with an energy gap of 140 cm–1 and a frequency fluctuation magnitude of 150 cm–1. As we further consider a coupling between the sites of −106
cm–1 the energy gap between the average eigenstates
is 254 cm–1 and, thus, larger than the thermal energy
(|J| < ΔE < σ < kBT). Following
the initial excitation of the highest eigenstate in the population
of that state decay as shown in Figure a, again the population predicted by the NISE method
approached the 50% high-temperature equilibrium population at long
times. The SESH and HEOM both end at populations of ∼22%, and
the predicted transfer is approximately twice as fast as for NISE,
as the backward transfer from the lowest- to the highest-energy eigenstate
is heavily suppressed. The TNISE in this case only decays to 30% and
does not recover the full thermalization. At short times, the HEOM
exhibit a fast nonexponential decay feature (T <
100 fs). This is attributed to the use of the average eigenstate population
instead of the instantaneous eigenstate population in this case. For
the site population following the initial excitation of the highest-frequency
site (see Figure b)
initial coherent oscillations are observed at early times for both
NISE, TNISE, and HEOM, and again the equilibrium populations for the
two methods deviate due to the high-temperature approximation employed
in the NISE method. The TNISE relax to a final population between
the NISE and HEOM results. The present results suggest that using
the SESH for modeling quantum dynamics in FMO-like systems will be
a significant advantage as compared to using the NISE approximation.
The recovered results are very close to those found with the formally
exact HEOM method. The TNISE performs worse even though it does present
an improvement compared to NISE.
Figure 4
(a) The population of the highest-energy
FMO-like (instantaneous)
eigenstate following excitation of that state for the amide-like parameters
according to the HEOM (red), NISE (blue), SESH (green), and TNISE
(dashed black) approaches. (b) The population of the highest-energy
FMO chromophore following initial excitation of that site according
to the HEOM (red), NISE (blue), and TNISE (dashed black) approaches.
(a) The population of the highest-energy
FMO-like (instantaneous)
eigenstate following excitation of that state for the amide-like parameters
according to the HEOM (red), NISE (blue), SESH (green), and TNISE
(dashed black) approaches. (b) The population of the highest-energy
FMO chromophore following initial excitation of that site according
to the HEOM (red), NISE (blue), and TNISE (dashed black) approaches.We now proceed to look at a more
complex bacterial light-harvesting
system, LH2. This system is characterized by two separate bands denoted
the B800 and the B850 bands.[111,112] The B800 band is understood
to consist of eight or nine weakly coupled bacteriochlorophyll molecules,
while the B850 band consists of 16 or 18 strongly coupled bacteriochlorophyll
molecules.[42,113−126] The number of molecules depend on the bacterial species.[127−129] Here, we again simplify this to a representative two-level dimer
system, with one site representing a site in the B800 band and a site
representing a site in the B850 band. The gap is set to 300 cm–1, which is larger than the thermal energy. At the
same time, the frequency fluctuations are set to 100 cm–1, which is also quite large. The relatively small coupling of 47
cm–1, in this case, means that the eigenstates are
essentially localized on the sites in contrast to the FMO-like system
described above, where the coupling was comparable to the energy gap
(|J| σ < ΔE < kBT). In this case the quantum
dynamics at short times (T < 1 ps) is essentially
identical for the HEOM and SESH approaches (see Figure a). The longtime behavior is, however, different,
with the HEOM predicting a lower equilibrium population. This was
also seen for the amide I–amide II system, albeit to a much
smaller extent. The explanation is that for these systems the reorganization
energy (λ = σ2/2kBT) is non-negligible compared to the thermal energy, and the final excitation is localized on one of the sites,
which results in a Stokes shift of this low-energy site in the exact
HEOM approach. In the SESH this effect is not included. For the water
model and the FMO model the excitation on the low-energy eigenstate
is much more delocalized, and the Stokes shift present is affecting
both bath coordinates more or less equally, and then the quantum dynamics
is less affected, as the change of the energy gap in the Hamiltonian
is not affected by the lowering of the energy of both sites. Still,
here the SESH provide a considerable improvement compared to the NISE
approach, and we can easily understand why the applied approximation
breaks down at longer times. For TNISE the decay is between that of
the NISE and the HEOM as was the case for the FMO parameters. In the
real LH2 complex the dynamics is actually much faster than seen here
due to the presence of mixed B800/B850 states,[123] when all chromophores are included. It is also known that
the excitation in the B850 band is very delocalized, and the effect
of the Stokes shift is smaller in reality. We finally examine the
quantum dynamics of the site populations predicted by the NISE, TNISE,
and HEOM approaches as presented in Figure b. The results are similar for the first
100 fs, after which the decay in the HEOM become significantly faster
than for both the TNISE and NISE approach. This can be understood
as the time-scale for the bath coordinates is 100 fs, and following
this time the bath has time to respond to the excitation of the quantum
system. The initial effect is that the energy of the initially excited
high-energy state is slightly lowered due to the bath reorganization,
and at the same time the back-transfer of excitation from the low-energy
state is suppressed, as there is not sufficient energy in the bath
to support such transfer.
Figure 5
(a) The population of the highest-energy LH2,
B800 bandlike (instantaneous)
eigenstate following excitation of that state for the amide-like parameters
according to the HEOM (red), NISE (blue), SESH (green), and TNISE
(dashed black) approaches. (b) The population of the highest-energy
LH2 B800-like chromophore following initial excitation of that site
according to the HEOM (red), NISE (blue), and TNISE (dashed black)
approaches.
(a) The population of the highest-energy LH2,
B800 bandlike (instantaneous)
eigenstate following excitation of that state for the amide-like parameters
according to the HEOM (red), NISE (blue), SESH (green), and TNISE
(dashed black) approaches. (b) The population of the highest-energy
LH2 B800-like chromophore following initial excitation of that site
according to the HEOM (red), NISE (blue), and TNISE (dashed black)
approaches.The temperature dependence
was further examined for the amide I–amide
II parameters. The instantaneous eigenstate populations calculated
for four different temperatures are presented in Figure . Both the SESH and the TNISE
methods provide good results down to 150 K, but not at 70 K, where
the thermal energy is smaller than the gap between the eigenstates.
We conclude that the new methods can be safely applied when the temperature
is not too much smaller than the width of the band. In the present
approaches, the bath is assumed to behave in a classical manner, and
it may thus be possible to improve the agreement using quantum correction
factors[130,131] to correct for the quantization of the bath
energy at low temperature.
Figure 6
Population of the amide I (instantaneous) eigenstate
following
excitation of that state for the amide-like parameters according to
the HEOM (red), NISE (blue), SESH (green), and TNISE (dashed black)
approaches at 75 K (a), 150 K (b), 300 K (c), and 600 K (d).
Population of the amide I (instantaneous) eigenstate
following
excitation of that state for the amide-like parameters according to
the HEOM (red), NISE (blue), SESH (green), and TNISE (dashed black)
approaches at 75 K (a), 150 K (b), 300 K (c), and 600 K (d).The TNISE method scaling the elements
of the nonadiabatic coupling
matrix is quite similar to the scaling method of Bastida et al.,[15] for which an improved scaling version was presented
by Kleinekathöfer.[21] In the methods
by Bastida and Kleinekathöfer a symmetrization of the nonadiabatic
couplings was employed to account for the nonhermitian structure of
the scaled matrix, while here a renormalization of the wave function
was used for the TNISE method. In Figure the present methods are further compared
with the improved scaling method (following the implementation as
described in ref (21)) revealing that the TNISE results are at least for this case in
better agreement with the exact HEOM result. For the site population,
the decoherence of the improved scaling method is clearly too fast,
while the correct thermal equilibrium is reached. The slower convergence
of the SESH method due to its stochastic nature is evident.
Figure 7
(a) The population
of the amide I (instantaneous) eigenstate following
excitation of that state for the amide-like parameters according to
the HEOM (red), NISE (blue), SESH (green), TNISE (dashed black), and
improved scaling (magenta) approaches at 150 K. (b) The population
of the amide I site following excitation of that site. The same color
scheme is used as in (a), but there are no data for SESH.
(a) The population
of the amide I (instantaneous) eigenstate following
excitation of that state for the amide-like parameters according to
the HEOM (red), NISE (blue), SESH (green), TNISE (dashed black), and
improved scaling (magenta) approaches at 150 K. (b) The population
of the amide I site following excitation of that site. The same color
scheme is used as in (a), but there are no data for SESH.The TNISE, the improved scaling method, and the
SESH all require
transformations to the instantaneous adiabatic basis. This may cause
problems when the instantaneous eigenstates between neighboring times
steps need to be matched. This problem also exists for the original
surface-hopping method, and small time steps may be required, in particular,
for systems involving conical intersections.[8] One could consider improving the behavior, in particular, of the
TNISE method by adapting the temperature dependence of the scaling
factor. In the SESH one could likewise try to use the quantum thermal
energy average. This is, however, not so trivial, as the kinetic energy
of a quantum harmonic oscillator depends on the frequency of the oscillator
and not just on the temperature. More explicit knowledge on the degrees
of freedom is, thus, needed than for the present approximations, where
the bath fluctuations are effectively treated through one effective
bath coordinate. For anharmonic bath coordinates, the assumptions
are even more complex.The two new methods for calculating quantum
dynamics with thermalization
were found to predict the dynamics quite well when the system parameters
are not too large compared to the thermal energy. As such the approaches
may work very well, in particular, for modeling thermal relaxation
in vibrational modes or when the thermal effect is just a secondary
effect and not the primary point of interest. The SESH method has
two important drawbacks. First, because of its stochastic nature it
converges quite slowly, and a large number of realizations are needed.
Second, the method, at least as developed here, only consider the
dynamics in terms of instantaneous eigenstates. Coherent superpositions
may be possible to consider combining the present approach with recently
developed surface-hopping approaches that include coherent superpositions.[46,54] The TNISE method performed very well for the vibrational systems
and required the use of smaller time steps to guarantee identification
of the right eigenstates in the electronic systems, where the performance
was also generally worse than for the SESH method. Still the TNISE
approach is very simple in implementation, and it converges faster
than the SESH. This will, in particular, be important if the methods
are combined with response function calculations to model coherent
multidimensional spectroscopic signals (see refs (63, 76, 87, 90, 98, 105, 123, and 132−137)) and when a large number of classical coordinates are involved.The new methods have some similarity to the classical path approximation
(CPA),[11] where one first integrates the
time-dependent Schrödinger equation for a predetermined classical
trajectory and then use Tully’s hopping procedure to estimate
populations to make sure one reaches detailed balance. This method
is also only applicable for small reorganization energies. The SESH
should be easy to combine with a recently developed generalization
for treating coherences in the fewest-switches surface-hopping framework.[54]
Conclusions
In summary, we developed
a new surface-hopping-based approach for
simulating quantum dynamics that accounts for thermalization and a
rescaled NISE approach, both without explicit feedback to the bath
trajectory. The new approaches were compared for a number of coupled
two-level systems mimicking the expected conditions in typical vibrational
and electronic systems. Clearly, they both considerably improve the
thermalization dynamics as compared to the simple NISE approach, while
the bath relaxation is neglected resulting in deviations from the
exact HEOM results when the reorganization energy is large. Here,
we only considered very simple model systems, which can also easily
be modeled with the HEOM approach; the new approaches can both easily
be extended to systems with general Hamiltonian fluctuations, including
fluctuations of the couplings, correlated couplings between sites,
and non-Gaussian fluctuations. They can further be extended to complex
systems including hundreds of coupled sites[69,138] or systems with conical intersections,[137] as it is the case for the simpler but not correctly thermalizing
NISE approach.[60] The new SESH method was
found to provide the best overall accuracy especially when the energy
gaps are large. However, this method does converge slower than the
new TNISE method, which will thus be the method of choice when the
energy gaps are smaller than the thermal energy. One other important
limitation of the SESH method is that it treats the system as always
being in an eigenstate, which complicates implementation for simulating
spectroscopic signals.[87]The new
approaches can be implemented to model pump–probe,
two-dimensional spectroscopies,[76,77] and time-resolved fluorescence[139,140] spectroscopies that report on the quantum dynamics. The methods
may further prove useful in the development of new methods for modeling
spectroscopies involving both vibrational and electronic degrees of
freedom.[141,142] With the development of broad-band
laser sources,[143,144] experimental spectra spanning
very broad frequency regions have become available, and the new method
has the potential to allow modeling such spectra. As the Achilles
heel of the methods is that the system–bath interaction should
not be too large compared to the thermal energy the most straightforward
solution to this problem is to include all strongly coupled modes
explicitly in the quantum Hamiltonian. Obviously, there is a limit
for how many degrees of freedom can be included; however, one could
imagine combining the present approaches with the multiconfiguration
time-dependent Hartree[20] method that allows
treating very large quantum systems.
Authors: Sofia Georgakopoulou; Raoul N Frese; Evelyn Johnson; Corline Koolhaas; Richard J Cogdell; Rienk van Grondelle; Gert van der Zwan Journal: Biophys J Date: 2002-04 Impact factor: 4.033