Literature DB >> 36207489

Recent progress in atomistic modeling of light-harvesting complexes: a mini review.

Sayan Maity1, Ulrich Kleinekathöfer2.   

Abstract

In this mini review, we focus on recent advances in the atomistic modeling of biological light-harvesting (LH) complexes. Because of their size and sophisticated electronic structures, multiscale methods are required to investigate the dynamical and spectroscopic properties of such complexes. The excitation energies, in this context also known as site energies, excitonic couplings, and spectral densities are key quantities which usually need to be extracted to be able to determine the exciton dynamics and spectroscopic properties. The recently developed multiscale approach based on the numerically efficient density functional tight-binding framework followed by excited state calculations has been shown to be superior to the scheme based on pure classical molecular dynamics simulations. The enhanced approach, which improves the description of the internal vibrational dynamics of the pigment molecules, yields spectral densities in good agreement with the experimental counterparts for various bacterial and plant LH systems. Here, we provide a brief overview of those results and described the theoretical foundation of the multiscale protocol.
© 2022. The Author(s).

Entities:  

Keywords:  Excited state calculations; Exciton dynamics; Light-harvesting complexes; Multiscale modeling; QM/MM simulations; Spectral densities

Year:  2022        PMID: 36207489     DOI: 10.1007/s11120-022-00969-w

Source DB:  PubMed          Journal:  Photosynth Res        ISSN: 0166-8595            Impact factor:   3.429


  105 in total

1.  Light- and pH-dependent structural changes in the PsbS subunit of photosystem II.

Authors:  Elisabetta Bergantino; Anna Segalla; Alessia Brunetta; Enrico Teardo; Fernanda Rigoni; Giorgio Mario Giacometti; Ildikò Szabò
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

2.  Juxtaposing density matrix and classical path-based wave packet dynamics.

Authors:  Mortaza Aghtar; Jörg Liebers; Johan Strümpfer; Klaus Schulten; Ulrich Kleinekathöfer
Journal:  J Chem Phys       Date:  2012-06-07       Impact factor: 3.488

3.  Different Types of Vibrations Interacting with Electronic Excitations in Phycoerythrin 545 and Fenna-Matthews-Olson Antenna Systems.

Authors:  Mortaza Aghtar; Johan Strümpfer; Carsten Olbrich; Klaus Schulten; Ulrich Kleinekathöfer
Journal:  J Phys Chem Lett       Date:  2014-09-02       Impact factor: 6.475

4.  Multiscale model of light harvesting by photosystem II in plants.

Authors:  Kapil Amarnath; Doran I G Bennett; Anna R Schneider; Graham R Fleming
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

Review 5.  Comparing photosynthetic and photovoltaic efficiencies and recognizing the potential for improvement.

Authors:  Robert E Blankenship; David M Tiede; James Barber; Gary W Brudvig; Graham Fleming; Maria Ghirardi; M R Gunner; Wolfgang Junge; David M Kramer; Anastasios Melis; Thomas A Moore; Christopher C Moser; Daniel G Nocera; Arthur J Nozik; Donald R Ort; William W Parson; Roger C Prince; Richard T Sayre
Journal:  Science       Date:  2011-05-13       Impact factor: 47.728

6.  Q y and Q x Absorption Bands for Bacteriochlorophyll a Molecules from LH2 and LH3.

Authors:  André Anda; Thorsten Hansen; Luca De Vico
Journal:  J Phys Chem A       Date:  2019-06-18       Impact factor: 2.781

7.  Impact of Electronic Fluctuations and Their Description on the Exciton Dynamics in the Light-Harvesting Complex PE545.

Authors:  Mortaza Aghtar; Ulrich Kleinekathöfer; Carles Curutchet; Benedetta Mennucci
Journal:  J Phys Chem B       Date:  2017-02-03       Impact factor: 2.991

8.  Benchmark and performance of long-range corrected time-dependent density functional tight binding (LC-TD-DFTB) on rhodopsins and light-harvesting complexes.

Authors:  Beatrix M Bold; Monja Sokolov; Sayan Maity; Marius Wanko; Philipp M Dohmen; Julian J Kranz; Ulrich Kleinekathöfer; Sebastian Höfener; Marcus Elstner
Journal:  Phys Chem Chem Phys       Date:  2020-01-17       Impact factor: 3.676

9.  Energy-dependent quenching adjusts the excitation diffusion length to regulate photosynthetic light harvesting.

Authors:  Doran I G Bennett; Graham R Fleming; Kapil Amarnath
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-20       Impact factor: 11.205

10.  Local protein solvation drives direct down-conversion in phycobiliprotein PC645 via incoherent vibronic transport.

Authors:  Samuel M Blau; Doran I G Bennett; Christoph Kreisbeck; Gregory D Scholes; Alán Aspuru-Guzik
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-27       Impact factor: 11.205

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