Literature DB >> 20550404

Two-dimensional infrared spectroscopy and ultrafast anisotropy decay of water.

T L C Jansen1, B M Auer, Mino Yang, J L Skinner.   

Abstract

We introduce a sparse-matrix algorithm that allows for the simulation of two-dimensional infrared (2DIR) spectra in systems with many coupled chromophores. We apply the method to bulk water, and our results are based on the recently developed ab initio maps for the vibrational Hamiltonian. Qualitative agreement between theory and experiment is found for the 2DIR spectra without the use of any fitting or scaling parameters in the Hamiltonian. The calculated spectra for bulk water are not so different from those for HOD in D(2)O, which we can understand by considering the spectral diffusion time-correlation functions in both cases. We also calculate the ultrafast anisotropy decay, which is dominated by population transfer, finding very good agreement with experiment. Finally, we determine the vibrational excitation diffusion rate, which is more than two orders of magnitude faster than the diffusion of the water molecules themselves.

Entities:  

Year:  2010        PMID: 20550404     DOI: 10.1063/1.3454733

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  16 in total

1.  From atomistic modeling to excitation transfer and two-dimensional spectra of the FMO light-harvesting complex.

Authors:  Carsten Olbrich; Thomas L C Jansen; Jörg Liebers; Mortaza Aghtar; Johan Strümpfer; Klaus Schulten; Jasper Knoester; Ulrich Kleinekathöfer
Journal:  J Phys Chem B       Date:  2011-06-14       Impact factor: 2.991

Review 2.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

3.  Vibrational spectroscopy of water in hydrated lipid multi-bilayers. I. Infrared spectra and ultrafast pump-probe observables.

Authors:  S M Gruenbaum; J L Skinner
Journal:  J Chem Phys       Date:  2011-08-21       Impact factor: 3.488

4.  Vibrational spectroscopy of water at interfaces.

Authors:  J L Skinner; P A Pieniazek; S M Gruenbaum
Journal:  Acc Chem Res       Date:  2011-10-27       Impact factor: 22.384

5.  IR Spectroscopy Can Reveal the Mechanism of K+ Transport in Ion Channels.

Authors:  Steven E Strong; Nicholas J Hestand; Alexei A Kananenka; Martin T Zanni; J L Skinner
Journal:  Biophys J       Date:  2019-11-20       Impact factor: 4.033

6.  Water vibrations have strongly mixed intra- and intermolecular character.

Authors:  Krupa Ramasesha; Luigi De Marco; Aritra Mandal; Andrei Tokmakoff
Journal:  Nat Chem       Date:  2013-09-22       Impact factor: 24.427

7.  Spectral diffusion at the water/lipid interface revealed by two-dimensional fourth-order optical spectroscopy: a classical simulation study.

Authors:  Yuki Nagata; Shaul Mukamel
Journal:  J Am Chem Soc       Date:  2011-02-18       Impact factor: 15.419

8.  Site-Specific Peptide Probes Detect Buried Water in a Lipid Membrane.

Authors:  Jennifer C Flanagan; Carlos R Baiz
Journal:  Biophys J       Date:  2019-03-19       Impact factor: 4.033

9.  Dynamics of Functionalized Surface Molecular Monolayers Studied with Ultrafast Infrared Vibrational Spectroscopy.

Authors:  Daniel E Rosenfeld; Jun Nishida; Chang Yan; Zsolt Gengeliczki; Brian J Smith; Michael D Fayer
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2012-11-08       Impact factor: 4.126

10.  Parallel β-sheet vibrational couplings revealed by 2D IR spectroscopy of an isotopically labeled macrocycle: quantitative benchmark for the interpretation of amyloid and protein infrared spectra.

Authors:  Ann Marie Woys; Aaron M Almeida; Lu Wang; Chi-Cheng Chiu; Michael McGovern; Juan J de Pablo; James L Skinner; Samuel H Gellman; Martin T Zanni
Journal:  J Am Chem Soc       Date:  2012-11-09       Impact factor: 15.419

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