Literature DB >> 22697524

Juxtaposing density matrix and classical path-based wave packet dynamics.

Mortaza Aghtar1, Jörg Liebers, Johan Strümpfer, Klaus Schulten, Ulrich Kleinekathöfer.   

Abstract

In many physical, chemical, and biological systems energy and charge transfer processes are of utmost importance. To determine the influence of the environment on these transport processes, equilibrium molecular dynamics simulations become more and more popular. From these simulations, one usually determines the thermal fluctuations of certain energy gaps, which are then either used to perform ensemble-averaged wave packet simulations, also called Ehrenfest dynamics, or to employ a density matrix approach via spectral densities. These two approaches are analyzed through energy gap fluctuations that are generated to correspond to a predetermined spectral density. Subsequently, density matrix and wave packet simulations are compared through population dynamics and absorption spectra for different parameter regimes. Furthermore, a previously proposed approach to enforce the correct long-time behavior in the wave packet simulations is probed and an improvement is proposed.

Mesh:

Year:  2012        PMID: 22697524      PMCID: PMC3376871          DOI: 10.1063/1.4723669

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  31 in total

1.  Atomistic study of the long-lived quantum coherences in the Fenna-Matthews-Olson complex.

Authors:  Sangwoo Shim; Patrick Rebentrost; Stéphanie Valleau; Alán Aspuru-Guzik
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

2.  Time-dependent atomistic view on the electronic relaxation in light-harvesting system II.

Authors:  Carsten Olbrich; Ulrich Kleinekathöfer
Journal:  J Phys Chem B       Date:  2010-09-30       Impact factor: 2.991

3.  Augmented Ehrenfest dynamics yields a rate for surface hopping.

Authors:  Joseph E Subotnik
Journal:  J Chem Phys       Date:  2010-04-07       Impact factor: 3.488

4.  Detailed Balance in Ehrenfest Mixed Quantum-Classical Dynamics.

Authors:  Priya V Parandekar; John C Tully
Journal:  J Chem Theory Comput       Date:  2006-03       Impact factor: 6.006

5.  Charge transport in semiconductors with multiscale conformational dynamics.

Authors:  Alessandro Troisi; David L Cheung; Denis Andrienko
Journal:  Phys Rev Lett       Date:  2009-03-20       Impact factor: 9.161

6.  Light harvesting complex II B850 excitation dynamics.

Authors:  Johan Strümpfer; Klaus Schulten
Journal:  J Chem Phys       Date:  2009-12-14       Impact factor: 3.488

7.  Liouville-von Neumann molecular dynamics.

Authors:  Jacek Jakowski; Keiji Morokuma
Journal:  J Chem Phys       Date:  2009-06-14       Impact factor: 3.488

8.  Theoretical examination of quantum coherence in a photosynthetic system at physiological temperature.

Authors:  Akihito Ishizaki; Graham R Fleming
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-07       Impact factor: 11.205

9.  Fast, accurate algorithm for numerical simulation of exponentially correlated colored noise.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1988-12-01

10.  Theory and Simulation of the Environmental Effects on FMO Electronic Transitions.

Authors:  Carsten Olbrich; Johan Strümpfer; Klaus Schulten; Ulrich Kleinekathöfer
Journal:  J Phys Chem Lett       Date:  2011-06-30       Impact factor: 6.475

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  4 in total

1.  Theoretical characterization of excitation energy transfer in chlorosome light-harvesting antennae from green sulfur bacteria.

Authors:  Takatoshi Fujita; Joonsuk Huh; Semion K Saikin; Jennifer C Brookes; Alán Aspuru-Guzik
Journal:  Photosynth Res       Date:  2014-02-07       Impact factor: 3.573

Review 2.  Recent progress in atomistic modeling of light-harvesting complexes: a mini review.

Authors:  Sayan Maity; Ulrich Kleinekathöfer
Journal:  Photosynth Res       Date:  2022-10-07       Impact factor: 3.429

3.  The FMO complex in a glycerol-water mixture.

Authors:  Mortaza Aghtar; Johan Strümpfer; Carsten Olbrich; Klaus Schulten; Ulrich Kleinekathöfer
Journal:  J Phys Chem B       Date:  2013-06-06       Impact factor: 2.991

4.  Simple Quantum Dynamics with Thermalization.

Authors:  Thomas L C Jansen
Journal:  J Phys Chem A       Date:  2017-12-20       Impact factor: 2.781

  4 in total

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