Literature DB >> 29192585

Yeast eIF4A enhances recruitment of mRNAs regardless of their structural complexity.

Paul Yourik1, Colin Echeverría Aitken1, Fujun Zhou1, Neha Gupta1, Alan G Hinnebusch2, Jon R Lorsch1.   

Abstract

eIF4A is a DEAD-box RNA-dependent ATPase thought to unwind RNA secondary structure in the 5'-untranslated regions (UTRs) of mRNAs to promote their recruitment to the eukaryotic translation pre-initiation complex (PIC). We show that eIF4A's ATPase activity is markedly stimulated in the presence of the PIC, independently of eIF4E•eIF4G, but dependent on subunits i and g of the heteromeric eIF3 complex. Surprisingly, eIF4A accelerated the rate of recruitment of all mRNAs tested, regardless of their degree of structural complexity. Structures in the 5'-UTR and 3' of the start codon synergistically inhibit mRNA recruitment in a manner relieved by eIF4A, indicating that the factor does not act solely to melt hairpins in 5'-UTRs. Our findings that eIF4A functionally interacts with the PIC and plays important roles beyond unwinding 5'-UTR structure is consistent with a recent proposal that eIF4A modulates the conformation of the 40S ribosomal subunit to promote mRNA recruitment.

Entities:  

Keywords:  RNA helicase; S. cerevisiae; biochemistry; biophysics; eIF4A; eIF4F; mRNA recruitment; ribosome; structural biology; translation initiation

Mesh:

Substances:

Year:  2017        PMID: 29192585      PMCID: PMC5726853          DOI: 10.7554/eLife.31476

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.713


  91 in total

1.  Pi release from eIF2, not GTP hydrolysis, is the step controlled by start-site selection during eukaryotic translation initiation.

Authors:  Mikkel A Algire; David Maag; Jon R Lorsch
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Journal:  Trends Biochem Sci       Date:  2011-01       Impact factor: 13.807

3.  Structural basis for the enhancement of eIF4A helicase activity by eIF4G.

Authors:  Monika Oberer; Assen Marintchev; Gerhard Wagner
Journal:  Genes Dev       Date:  2005-09-15       Impact factor: 11.361

4.  Eukaryotic translation initiation factor 3 (eIF3) and eIF2 can promote mRNA binding to 40S subunits independently of eIF4G in yeast.

Authors:  Antonina V Jivotovskaya; Leos Valásek; Alan G Hinnebusch; Klaus H Nielsen
Journal:  Mol Cell Biol       Date:  2006-02       Impact factor: 4.272

5.  A comprehensive, quantitative, and genome-wide model of translation.

Authors:  Marlena Siwiak; Piotr Zielenkiewicz
Journal:  PLoS Comput Biol       Date:  2010-07-29       Impact factor: 4.475

6.  Cap-dependent eukaryotic initiation factor-mRNA interactions probed by cross-linking.

Authors:  Lisa Lindqvist; Hiroaki Imataka; Jerry Pelletier
Journal:  RNA       Date:  2008-03-26       Impact factor: 4.942

7.  Reconstitution of yeast translation initiation.

Authors:  Michael G Acker; Sarah E Kolitz; Sarah F Mitchell; Jagpreet S Nanda; Jon R Lorsch
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

8.  Translation initiation on mammalian mRNAs with structured 5'UTRs requires DExH-box protein DHX29.

Authors:  Vera P Pisareva; Andrey V Pisarev; Anton A Komar; Christopher U T Hellen; Tatyana V Pestova
Journal:  Cell       Date:  2008-12-26       Impact factor: 41.582

9.  Toward the mechanism of eIF4F-mediated ribosomal attachment to mammalian capped mRNAs.

Authors:  Parimal Kumar; Christopher U T Hellen; Tatyana V Pestova
Journal:  Genes Dev       Date:  2016-07-01       Impact factor: 11.361

10.  Rocaglates convert DEAD-box protein eIF4A into a sequence-selective translational repressor.

Authors:  Shintaro Iwasaki; Stephen N Floor; Nicholas T Ingolia
Journal:  Nature       Date:  2016-06-15       Impact factor: 49.962

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  24 in total

1.  Functional interplay between DEAD-box RNA helicases Ded1 and Dbp1 in preinitiation complex attachment and scanning on structured mRNAs in vivo.

Authors:  Neelam Dabas Sen; Neha Gupta; Stuart K Archer; Thomas Preiss; Jon R Lorsch; Alan G Hinnebusch
Journal:  Nucleic Acids Res       Date:  2019-09-19       Impact factor: 16.971

2.  mRNA- and factor-driven dynamic variability controls eIF4F-cap recognition for translation initiation.

Authors:  Burak Çetin; Seán E O'Leary
Journal:  Nucleic Acids Res       Date:  2022-08-12       Impact factor: 19.160

Review 3.  mRNA-based therapeutics: powerful and versatile tools to combat diseases.

Authors:  Shugang Qin; Xiaoshan Tang; Yuting Chen; Kepan Chen; Na Fan; Wen Xiao; Qian Zheng; Guohong Li; Yuqing Teng; Min Wu; Xiangrong Song
Journal:  Signal Transduct Target Ther       Date:  2022-05-21

4.  Rebirth of the translational machinery: The importance of recycling ribosomes.

Authors:  David J Young; Nicholas R Guydosh
Journal:  Bioessays       Date:  2022-02-11       Impact factor: 4.653

5.  Distinct interactions of eIF4A and eIF4E with RNA helicase Ded1 stimulate translation in vivo.

Authors:  Suna Gulay; Neha Gupta; Jon R Lorsch; Alan G Hinnebusch
Journal:  Elife       Date:  2020-05-29       Impact factor: 8.140

6.  Heterogeneous Dynamics of Protein-RNA Interactions across Transcriptome-Derived Messenger RNA Populations.

Authors:  Burak Çetin; Gary J Song; Seán E O'Leary
Journal:  J Am Chem Soc       Date:  2020-12-14       Impact factor: 15.419

7.  Yeast Ded1 promotes 48S translation pre-initiation complex assembly in an mRNA-specific and eIF4F-dependent manner.

Authors:  Neha Gupta; Jon R Lorsch; Alan G Hinnebusch
Journal:  Elife       Date:  2018-10-03       Impact factor: 8.140

Review 8.  Control of translation by eukaryotic mRNA transcript leaders-Insights from high-throughput assays and computational modeling.

Authors:  Christina Akirtava; Charles Joel McManus
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-08-31       Impact factor: 9.957

9.  Structure of a human 48S translational initiation complex.

Authors:  Jailson Brito Querido; Masaaki Sokabe; Sebastian Kraatz; Yuliya Gordiyenko; J Mark Skehel; Christopher S Fraser; V Ramakrishnan
Journal:  Science       Date:  2020-09-04       Impact factor: 63.714

10.  YB-1, an abundant core mRNA-binding protein, has the capacity to form an RNA nucleoprotein filament: a structural analysis.

Authors:  Dmitry A Kretov; Marie-Jeanne Clément; Guillaume Lambert; Dominique Durand; Dmitry N Lyabin; Guillaume Bollot; Cyril Bauvais; Anastasiia Samsonova; Karina Budkina; Rachid C Maroun; Loic Hamon; Ahmed Bouhss; Ewen Lescop; Flavio Toma; Patrick A Curmi; Alexandre Maucuer; Lev P Ovchinnikov; David Pastré
Journal:  Nucleic Acids Res       Date:  2019-04-08       Impact factor: 16.971

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