Literature DB >> 20813532

RNA helicases at work: binding and rearranging.

Eckhard Jankowsky1.   

Abstract

RNA helicases are ubiquitous, highly conserved enzymes that participate in nearly all aspects of RNA metabolism. These proteins bind or remodel RNA or RNA-protein complexes in an ATP-dependent fashion. How RNA helicases physically perform their cellular tasks has been a longstanding question, but in recent years, intriguing models have started to link structure, mechanism and biological function for some RNA helicases. This review outlines our current view on major structural and mechanistic themes of RNA helicase function, and on emerging physical models for cellular roles of these enzymes. Copyright Â
© 2010 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 20813532      PMCID: PMC3017212          DOI: 10.1016/j.tibs.2010.07.008

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  100 in total

1.  RNA structural rearrangement via unwinding and annealing by the cyanobacterial RNA helicase, CrhR.

Authors:  Danuta Chamot; Kimberley R Colvin; Sonya L Kujat-Choy; George W Owttrim
Journal:  J Biol Chem       Date:  2004-11-12       Impact factor: 5.157

2.  ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1.

Authors:  Quansheng Yang; Eckhard Jankowsky
Journal:  Biochemistry       Date:  2005-10-18       Impact factor: 3.162

3.  The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activity.

Authors:  Lionel Ballut; Brice Marchadier; Aurélie Baguet; Catherine Tomasetto; Bertrand Séraphin; Hervé Le Hir
Journal:  Nat Struct Mol Biol       Date:  2005-09-18       Impact factor: 15.369

4.  YxiN is a modular protein combining a DEx(D/H) core and a specific RNA-binding domain.

Authors:  Fedor V Karginov; Jonathan M Caruthers; YaoXiong Hu; David B McKay; Olke C Uhlenbeck
Journal:  J Biol Chem       Date:  2005-08-22       Impact factor: 5.157

5.  A DEAD-box protein alone promotes group II intron splicing and reverse splicing by acting as an RNA chaperone.

Authors:  Sabine Mohr; Manabu Matsuura; Philip S Perlman; Alan M Lambowitz
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-27       Impact factor: 11.205

6.  Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa.

Authors:  Toru Sengoku; Osamu Nureki; Akira Nakamura; Satoru Kobayashi; Shigeyuki Yokoyama
Journal:  Cell       Date:  2006-04-21       Impact factor: 41.582

7.  RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP.

Authors:  Sophie Dumont; Wei Cheng; Victor Serebrov; Rudolf K Beran; Ignacio Tinoco; Anna Marie Pyle; Carlos Bustamante
Journal:  Nature       Date:  2006-01-05       Impact factor: 49.962

8.  Discriminatory RNP remodeling by the DEAD-box protein DED1.

Authors:  Heath A Bowers; Patricia A Maroney; Margaret E Fairman; Berthold Kastner; Reinhard Lührmann; Timothy W Nilsen; Eckhard Jankowsky
Journal:  RNA       Date:  2006-03-23       Impact factor: 4.942

9.  The Putative RNA Helicase Dbp4p Is Required for Release of the U14 snoRNA from Preribosomes in Saccharomyces cerevisiae.

Authors:  Martin Kos; David Tollervey
Journal:  Mol Cell       Date:  2005-10-07       Impact factor: 17.970

10.  The nucleolar protein Esf2 interacts directly with the DExD/H box RNA helicase, Dbp8, to stimulate ATP hydrolysis.

Authors:  Sander Granneman; ChieYu Lin; Erica A Champion; Madhusudan R Nandineni; Cornelia Zorca; Susan J Baserga
Journal:  Nucleic Acids Res       Date:  2006-06-13       Impact factor: 16.971

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  223 in total

Review 1.  Single-molecule views of protein movement on single-stranded DNA.

Authors:  Taekjip Ha; Alexander G Kozlov; Timothy M Lohman
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

2.  Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production.

Authors:  Souad Naji; Géza Ambrus; Peter Cimermančič; Jason R Reyes; Jeffrey R Johnson; Rebecca Filbrandt; Michael D Huber; Paul Vesely; Nevan J Krogan; John R Yates; Andrew C Saphire; Larry Gerace
Journal:  Mol Cell Proteomics       Date:  2011-12-15       Impact factor: 5.911

Review 3.  Dbp5, Gle1-IP6 and Nup159: a working model for mRNP export.

Authors:  Andrew W Folkmann; Kristen N Noble; Charles N Cole; Susan R Wente
Journal:  Nucleus       Date:  2011-11-01       Impact factor: 4.197

Review 4.  Roles of DEAD-box proteins in RNA and RNP Folding.

Authors:  Cynthia Pan; Rick Russell
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

Review 5.  P68 RNA helicase as a molecular target for cancer therapy.

Authors:  Ting-Yu Dai; Liu Cao; Zi-Chen Yang; Ya-Shu Li; Li Tan; Xin-Ze Ran; Chun-Meng Shi
Journal:  J Exp Clin Cancer Res       Date:  2014-08-24

6.  Ebola virus VP35 has novel NTPase and helicase-like activities.

Authors:  Ting Shu; Tianyu Gan; Peng Bai; Xiaotong Wang; Qi Qian; Hui Zhou; Qi Cheng; Yang Qiu; Lei Yin; Jin Zhong; Xi Zhou
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

7.  RNA unwinding by the Trf4/Air2/Mtr4 polyadenylation (TRAMP) complex.

Authors:  Huijue Jia; Xuying Wang; James T Anderson; Eckhard Jankowsky
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-24       Impact factor: 11.205

8.  Structural insights reveal the specific recognition of roX RNA by the dsRNA-binding domains of the RNA helicase MLE and its indispensable role in dosage compensation in Drosophila.

Authors:  Mengqi Lv; Yixiang Yao; Fudong Li; Ling Xu; Lingna Yang; Qingguo Gong; Yong-Zhen Xu; Yunyu Shi; Yu-Jie Fan; Yajun Tang
Journal:  Nucleic Acids Res       Date:  2019-04-08       Impact factor: 16.971

9.  C-terminal residues specific to Vasa among DEAD-box helicases are required for its functions in piRNA biogenesis and embryonic patterning.

Authors:  Mehrnoush Dehghani; Paul Lasko
Journal:  Dev Genes Evol       Date:  2016-08-29       Impact factor: 0.900

Review 10.  How RNA-Binding Proteins Interact with RNA: Molecules and Mechanisms.

Authors:  Meredith Corley; Margaret C Burns; Gene W Yeo
Journal:  Mol Cell       Date:  2020-04-02       Impact factor: 17.970

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