| Literature DB >> 29178946 |
Renato Polimanti1, Ananda B Amstadter2, Murray B Stein3,4,5, Lynn M Almli6, Dewleen G Baker3,5, Laura J Bierut7, Bekh Bradley6,8, Lindsay A Farrer9, Eric O Johnson10, Anthony King11, Henry R Kranzler12, Adam X Maihofer3, John P Rice7, Andrea L Roberts13, Nancy L Saccone14, Hongyu Zhao15, Israel Liberzon11,16, Kerry J Ressler17,18, Caroline M Nievergelt3,5, Karestan C Koenen19,20,21, Joel Gelernter22,23.
Abstract
BACKGROUND: The nature and underlying mechanisms of the observed increased vulnerability to posttraumatic stress disorder (PTSD) in women are unclear.Entities:
Keywords: Anthropometric traits; Genetics; Trauma; Women
Mesh:
Year: 2017 PMID: 29178946 PMCID: PMC5702961 DOI: 10.1186/s13073-017-0491-4
Source DB: PubMed Journal: Genome Med ISSN: 1756-994X Impact factor: 11.117
GWAS summary statistics used for polygenic risk scoring
| Consortium | Trait | Abbreviation | Women N | Variant N | Data link |
|---|---|---|---|---|---|
| Genetic Investigation of ANthropometric Traits (GIANT) | Body mass index | BMI | 128,698 | 2,494,584 |
|
| BMI (age ≤ 50 years) | BMI<50 | 52,270 | 2,407,668 | ||
| BMI (age ≥ 50 years) | BMI>50 | 86,731 | 2,407,629 | ||
| Height | Height | 64,811 | 2,748,519 | ||
| Hip circumference | HIP | 85,973 | 2,466,814 | ||
| HIP adjusted for BMI | HIPadj | 84,787 | 2,466,814 | ||
| Waist circumference | WC | 90,543 | 2,444,344 | ||
| WC adjusted for BMI | WCadj | 89,759 | 2,473,027 | ||
| Waist–hip ratio | WHR | 85,466 | 2,466,093 | ||
| WHR adjusted for BMI | WHRadj | 84,222 | 2,467,768 | ||
| WHRadj (age ≤ 50 years) | WHRadj<50 | 34,523 | 2,366,527 | ||
| WHRadj (age ≥ 50 years) | WHRadj>50 | 56,150 | 2,366,567 | ||
| Reproductive Genetics (Reprogen) | Age at menarche | Menarche | 182,416 | 2,441,881 |
|
| Age at menopause | Menopause | 69,360 | 2,418,695 | ||
| Social Science Genetic Association Consortium (SSGAC) | Age at first birth | AFB | 158,856 | 2,470,136 |
|
| Education years | EDU | 122,427 | 7,643,300 | ||
| Number of children ever born | NEB | 222,837 | 2,471,862 |
Top genetic correlations between PTSD and PRS tested
| PRS | PT | SNP N | R |
| Q value |
|---|---|---|---|---|---|
| WCadj | 10–8 | 31 | –0.079 | 6.77 × 10–5 | 0.011 |
| WHRadj<50 | 10–6 | 19 | –0.076 | 1.25 × 10–4 | 0.011 |
| WHRadj>50 | 10–8 | 19 | –0.065 | 0.001 | 0.023 |
| AFB | 0.3 | 64,579 | –0.064 | 0.001 | 0.023 |
| WHR | 10–7 | 32 | –0.064 | 0.001 | 0.023 |
| WHRadj | 10–7 | 51 | –0.059 | 0.003 | 0.030 |
| Menarche | 10–3 | 1510 | 0.049 | 0.013 | 0.074 |
| BMI<50 | 10–7 | 26 | 0.048 | 0.015 | 0.077 |
| HIP | 10–5 | 94 | 0.045 | 0.024 | 0.108 |
| Height | 0.1 | 25,369 | 0.042 | 0.035 | 0.144 |
| WC | 10–8 | 20 | 0.034 | 0.082 | 0.266 |
| BMI>50 | 10–5 | 104 | 0.033 | 0.099 | 0.306 |
| BMI | 10–4 | 316 | 0.032 | 0.103 | 0.312 |
| NEB | 10–6 | 2 | –0.029 | 0.141 | 0.386 |
| HIPadj | 0.05 | 13,338 | 0.029 | 0.147 | 0.390 |
| EDU | 10–8 | 17 | –0.021 | 0.294 | 0.641 |
| Menopause | 10–5 | 163 | 0.018 | 0.360 | 0.686 |
Fig. 1SNP-exposure (WCadj associations) and SNP-outcome (PTSD associations) coefficients used in the MR analysis. Error bars (95% CIs) are reported for each association. The solid line represents the inverse-variance-weighted estimate
Fig. 2SNP-exposure (WCadj associations) and SNP-outcome (AFS associations, left; NSP associations, right) coefficients used in the MR analysis. Error bars (95% CIs) are reported for each association. The solid line represents the MR-Egger estimate