| Literature DB >> 29177134 |
Nestor Andres Parra1, Alan Pollack1, Felix M Chinea1, Matthew C Abramowitz1, Brian Marples1, Felipe Munera2, Rosa Castillo2, Oleksandr N Kryvenko3,4, Sanoj Punnen4, Radka Stoyanova1.
Abstract
PURPOSE: To develop a robust and clinically applicable automated method for analyzing Dynamic Contrast Enhanced (DCE-) MRI of the prostate as a guide for targeted biopsies and treatments.Entities:
Keywords: DCE-MRI; image processing; mpMRI; pattern recognition; prostate cancer
Year: 2017 PMID: 29177134 PMCID: PMC5686056 DOI: 10.3389/fonc.2017.00259
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Figure 1Workflow of quantitative DCE-MRI analysis. (A) The input consists of DCE-MRI and contours of the prostate, peripheral zone (PZ), and a sample of gluteus maximum (GM); (B) Motion correction of the prostate; (C) Non negative matrix factorization (NMF). The data are presented as a product of three temporal patterns (S1, S2, S3) and their magnitudes (W1, W2, W3). The well perfused pattern Swp is identified between the three patterns as the pattern with the largest AUC for the first 90 s; its corresponding weights Wwp represent an intensity map of the distribution of the well-perfused pixels in the data; (D) Wwp is segmented to identify the suspected for tumor region of interest ROIwp; (E) ROIwp is assigned to PZ if >10% of ROIwp is within the PZ contour and vice versa; (F,G) Series of quantitative features (DCE-score) are computed using the signal-vs-time SROI from ROIwp and SGM of GM; (H) A spatial map of tumor aggressiveness is computed using DCE-score and Wwp.
List of DCE quantitative features.
| Feature name | Definition | Referenced feature | |
|---|---|---|---|
| 1 | Early AUC | Early AUC ( | |
| 2 | Late AUC | Late AUC ( | |
| 3 | Wash-in | Wash-in ( | |
| 4 | Early AUFC | Early AUFC ( | |
| 5 | Late AUFC | Late AUFC ( | |
| 6 | Wash-out | ||
DCE, dynamic contrast enhanced; AUC, area under the curve; AUFC, area under the .
Notations: .
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Associations between Gleason Score and volumes of automatically segmented suspicious regions of interest (ROIs).
| PZ | Statistics | Otsu | 40% | 50% | 60% | 70% |
|---|---|---|---|---|---|---|
| 10% | Spearman’s ρ | 0.22 | 0.14 | 0.25 | 0.34 | 0.43 |
| 0.155 | 0.307 | 0.087 | 0.031 | 0.086 | ||
| PZ/TZ/rejected ( | 45/15/0 | 53/7/0 | 48/9/3 | 40/12/8 | 17/11/32 | |
| 15% | Spearman’s ρ | 0.19 | 0.13 | 0.27 | 0.39 | 0.43 |
| 0.230 | 0.364 | 0.096 | 0.022 | 0.086 | ||
| PZ/TZ/rejected ( | 40/20/0 | 51/9/0 | 40/17/3 | 35/17/8 | 17/11/32 | |
| 20% | Spearman’s ρ | 0.14 | 0.14 | 0.23 | 0.33 | 0.21 |
| 0.420 | 0.353 | 0.166 | 0.073 | 0.443 | ||
| PZ/TZ/rejected ( | 34/26/0 | 46/14/0 | 38/19/3 | 31/21/8 | 15/13/32 | |
PZ, peripheral zone; TZ, transition zone.
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Figure 2Associations of well-perfused region of interest (ROIwp) volume and quantitative DCE features with Gleason Score. (A) Associations (Spearman correlation coefficient and p-values) between peripheral zone ROIwp and GS divided in 3 (left) and 4 (right) groups; (B) association of the six quantitative DCE features, calculated from the signal-vs-time curve SROI of pzROIwp and GS; (C) The same as in (B) but after normalization with the signal-vs-time from the muscle reference; significant correlations are highlighted in red. (D) The same as in (C), but four groups for GS were considered.
Figure 3Association of quantitative DCE features and Gleason Score for MRI-US biopsies. (A–C) Associations of quantitative DCE features in MRI-US well-perfused ROI (usROIwp) with GS, separated in three, four, and two groups [indolent (GS = 6) vs aggressive (GS > 6)]. Significant associations are highlighted in red; (D) area under the curve for discrimination between indolent and aggressive tumors.
Figure 4Map of aggressiveness, using location and Gleason Score of MRI-US biopsies. (A,B) Axial slices of the prostate with mapped regions (in green and red) of the intersection of the identified well-perfused region ROIwp and the biopsy locations; (C) schematic representation of targeted biopsies with the biopsy needle tracks (yellow) in the target volumes. On pathology review, the biopsies were assigned GS = 6 (green target) and GS = 7 (for both biopsies in the red target). The blue target biopsy in transition zone was found benign; (D,E) map of aggressiveness, generated for earlyAUFCrat feature overlaid on the MRIs in (A,B). Color scheme of maps is given on the right. The areas of the positive biopsies are clearly identified.