| Literature DB >> 30854444 |
Nestor Andres Parra1, Hong Lu1,2, Jung Choi3, Kenneth Gage3, Julio Pow-Sang4, Robert J Gillies1,3, Yoganand Balagurunathan1.
Abstract
Prostate cancer identification and assessment of clinical significance continues to be a challenge. Routine multiparametric magnetic resonance imaging has shown to be useful in assessing disease progression. Although dynamic contrast-enhanced imaging (DCE) has the ability to characterize perfusion across time and has shown enormous utility, radiological assessment (Prostate Imaging-Reporting and Data System or PIRADS version 2) has limited its use owing to lack of consistency and nonquantitative nature. In our work, we propose a systematic methodology to quantify perfusion dynamics for the DCE imaging. Using these metrics, 7 different subregions or perfusion habitats of the targeted lesions are localized and related to clinical significance. We found that quantitative features describing the habitat based on the late area under the DCE time-activity curve was a good predictor of clinical significance disease. The best predictive feature in the habitat had an AUC of 0.82, CI [0.81-0.83].Entities:
Keywords: DCE; MRI; habitats; machine learning; prostate cancer; radiomics
Mesh:
Substances:
Year: 2019 PMID: 30854444 PMCID: PMC6403034 DOI: 10.18383/j.tom.2018.00037
Source DB: PubMed Journal: Tomography ISSN: 2379-1381
Figure 1.Block diagram shows the DCE habitat identification and processing. A perfusion tumor habitat was localized for each DCE feature map and these regions were characterized (by DCE features). Classification models were applied to identify features that can discriminate clinically significant prostate cancers.
Patients Enrolled in the Study With Their Biopsies Clinical Status and Scanner Differences
| Patients | Biopsies | Clinically Insignificant | Clinically Significant | |
|---|---|---|---|---|
| 1.5 T/ERC | 27 | 38 | 14 | 24 |
| 3 T | 25 | 34 | 11 | 23 |
| Total | 52 | 72 | 25 | 47 |
List of DCE Features
| Number | Feature ID | Feature Description | Dice |
|---|---|---|---|
| 1 | Peak enhancement, | 0.22 | |
| 2 | Time-to-peak | 0.42 | |
| 3 | Wash-in slope | 0.21 | |
| 4 | Wash-out slope | 0.25 | |
| 5 | Initial AUC, AUCt0-t0+60 | 0.33 | |
| 6 | Final (late) AUC, AUCt0+240-t0+270 | 0.22 | |
| 7 | Slope product, | 0.17 |
The DCE features were used in this paper to converge a habitat from the associated feature map and to characterize the average time activity curve in each habitat.
Figure 2.Example of prostate habitats based on DCE features. Radiologist's outline of an anterior lesion in the transition zone (TZ) (cyan) and prostate (yellow) contours overlapped with T2-weighted (T2w) imaging (A) and peak-enhancement DCE series (B). DCE feature maps for peak enhancement (C), time-to-peak (D), wash-in slope (E), wash-out slope (F), early AUC (G), late AUC (H), and slope product (I). DCE feature maps were built by parametrizing the DCE features for every voxel in the prostate.
Univariate Evaluation of DCE-Based Habitats Versus DCE Features
| Feature | |||||||
|---|---|---|---|---|---|---|---|
| Habitat | |||||||
| | |||||||
| Sensitivity | 0.54 | 0.76 | 0.60 | 0.68 | 0.43 | 0.56 | 0.64 |
| Specificity | 0.58 | 0.66 | 0.69 | 0.52 | 0.50 | 0.53 | 0.63 |
| | 0.56 | 0.71 | 0.65 | 0.60 | 0.47 | 0.54 | 0.63 |
| | |||||||
| Sensitivity | 0.44 | 0.55 | 0.71 | 0.59 | 0.49 | 0.71 | 0.71 |
| Specificity | 0.37 | 0.54 | 0.61 | 0.52 | 0.53 | 0.62 | 0.46 |
| | 0.41 | 0.55 | 0.66 | 0.55 | 0.51 | 0.67 | 0.58 |
| | |||||||
| Sensitivity | 0.48 | 0.40 | 0.54 | 0.51 | 0.58 | 0.58 | 0.44 |
| Specificity | 0.49 | 0.55 | 0.52 | 0.45 | 0.54 | 0.49 | 0.53 |
| | 0.48 | 0.48 | 0.53 | 0.48 | 0.56 | 0.53 | 0.49 |
| | |||||||
| Sensitivity | 0.55 | 0.71 | 0.60 | 0.65 | 0.59 | 0.56 | 0.58 |
| Specificity | 0.48 | 0.57 | 0.62 | 0.70 | 0.55 | 0.50 | 0.70 |
| | 0.52 | 0.64 | 0.61 | 0.67 | 0.57 | 0.53 | 0.64 |
| | |||||||
| Sensitivity | 0.57 | 0.49 | 0.47 | 0.59 | 0.55 | 0.55 | 0.55 |
| Specificity | 0.48 | 0.63 | 0.45 | 0.46 | 0.52 | 0.59 | 0.45 |
| | 0.53 | 0.56 | 0.46 | 0.52 | 0.53 | 0.57 | 0.50 |
| | |||||||
| Sensitivity | 0.55 | 0.68 | 0.66 | 0.63 | 0.68 | 0.57 | 0.71 |
| Specificity | 0.68 | 0.74 | 0.49 | 0.51 | 0.58 | 0.52 | 0.57 |
| | 0.62 | 0.71 | 0.58 | 0.57 | 0.63 | 0.54 | 0.64 |
| | |||||||
| Sensitivity | 0.65 | 0.66 | 0.42 | 0.62 | 0.45 | 0.57 | 0.68 |
| Specificity | 0.57 | 0.75 | 0.69 | 0.86 | 0.46 | 0.41 | 0.88 |
| | 0.61 | 0.71 | 0.56 | 0.74 | 0.46 | 0.49 | 0.78 |
Seven habitats were outlined by thresholding DCE feature maps (columns). For each habitat, the mean DCE feature values were computed (rows). Mean sensitivity, mean specificity, and mean AUC for classification between clinically insignificant and clinically significant cancer, based on MRI-guided biopsies. SVMs were used as classifiers with leave-1-out cross-validation. All patients in the study were included.
Univariate Evaluation of 1.5 T ERC DCE-Based Habitats Versus DCE Features
| 1.5 T ERC | Feature | ||||||
|---|---|---|---|---|---|---|---|
| Habitat | |||||||
| | |||||||
| Sensitivity | 0.54 | 0.63 | 0.58 | 0.7 | 0.58 | 0.51 | 0.52 |
| Specificity | 0.45 | 0.7 | 0.67 | 0.53 | 0.59 | 0.5 | 0.42 |
| | 0.49 | 0.66 | 0.63 | 0.62 | 0.59 | 0.5 | 0.47 |
| | |||||||
| Sensitivity | 0.47 | 0.6 | 0.64 | 0.72 | 0.5 | 0.53 | 0.62 |
| Specificity | 0.45 | 0.53 | 0.68 | 0.53 | 0.55 | 0.52 | 0.49 |
| | 0.46 | 0.57 | 0.66 | 0.62 | 0.53 | 0.52 | 0.56 |
| | |||||||
| Sensitivity | 0.39 | 0.56 | 0.6 | 0.52 | 0.49 | 0.51 | 0.47 |
| Specificity | 0.53 | 0.59 | 0.43 | 0.63 | 0.54 | 0.51 | 0.44 |
| | 0.46 | 0.57 | 0.52 | 0.57 | 0.52 | 0.51 | 0.46 |
| | |||||||
| Sensitivity | 0.42 | 0.59 | 0.67 | 0.43 | 0.55 | 0.57 | 0.57 |
| Specificity | 0.65 | 0.51 | 0.6 | 0.49 | 0.58 | 0.42 | 0.52 |
| | 0.54 | 0.55 | 0.64 | 0.46 | 0.57 | 0.49 | 0.54 |
| | |||||||
| Sensitivity | 0.43 | 0.71 | 0.64 | 0.52 | 0.51 | 0.37 | 0.59 |
| Specificity | 0.55 | 0.69 | 0.52 | 0.64 | 0.43 | 0.45 | 0.55 |
| | 0.49 | 0.7 | 0.58 | 0.58 | 0.47 | 0.41 | 0.57 |
| | |||||||
| Sensitivity | 0.42 | 0.55 | 0.46 | 0.72 | 0.56 | 0.65 | |
| Specificity | 0.42 | 0.74 | 0.48 | 0.76 | 0.64 | 0.66 | |
| | 0.42 | 0.64 | 0.47 | 0.74 | 0.6 | 0.66 | |
| | |||||||
| Sensitivity | 0.65 | 0.61 | 0.66 | 0.72 | 0.72 | 0.63 | |
| Specificity | 0.63 | 0.81 | 0.59 | 0.79 | 0.66 | 0.46 | |
| | 0.64 | 0.71 | 0.62 | 0.75 | 0.69 | 0.55 | |
Seven habitats were outlined by thresholding DCE feature maps (columns). For each habitat, the mean DCE feature values were computed (rows). Mean sensitivity, mean specificity, and mean AUC for classification between clinically insignificant and clinically significant cancer, based on MRI-guided biopsies. SVMs were used as classifiers with leave-1-out cross-validation. All patients in the study were included. The two features with the largest AUC amongst all habitats have been indicated in boldface.
Univariate Evaluation of 3 T Pelvic Coil DCE-Based Habitats Versus DCE Features
| 3 T PELVIC | Feature | ||||||
|---|---|---|---|---|---|---|---|
| Habitat | |||||||
| | |||||||
| Sensitivity | 0.52 | 0.59 | 0.6 | 0.7 | 0.65 | 0.67 | |
| Specificity | 0.62 | 0.8 | 0.89 | 0.54 | 0.71 | 0.79 | |
| | 0.57 | 0.7 | 0.74 | 0.62 | 0.68 | 0.73 | |
| | |||||||
| Sensitivity | 0.67 | 0.49 | 0.64 | 0.58 | 0.4 | 0.68 | 0.69 |
| Specificity | 0.69 | 0.66 | 0.6 | 0.56 | 0.61 | 0.79 | 0.58 |
| | 0.68 | 0.57 | 0.62 | 0.57 | 0.51 | 0.73 | 0.63 |
| | |||||||
| Sensitivity | 0.78 | 0.31 | 0.54 | 0.51 | 0.68 | 0.59 | 0.57 |
| Specificity | 0.68 | 0.64 | 0.57 | 0.46 | 0.57 | 0.69 | 0.57 |
| | 0.73 | 0.48 | 0.55 | 0.48 | 0.63 | 0.64 | 0.57 |
| | |||||||
| Sensitivity | 0.66 | 0.46 | 0.45 | 0.56 | 0.45 | 0.72 | 0.5 |
| Specificity | 0.56 | 0.36 | 0.47 | 0.67 | 0.48 | 0.52 | 0.61 |
| | 0.61 | 0.41 | 0.46 | 0.61 | 0.46 | 0.62 | 0.56 |
| | |||||||
| Sensitivity | 0.54 | 0.5 | 0.56 | 0.58 | 0.58 | 0.69 | 0.7 |
| Specificity | 0.63 | 0.6 | 0.55 | 0.67 | 0.62 | 0.8 | 0.6 |
| | 0.59 | 0.55 | 0.55 | 0.63 | 0.6 | 0.75 | 0.65 |
| | |||||||
| Sensitivity | 0.66 | 0.64 | 0.53 | 0.56 | 0.66 | 0.58 | |
| Specificity | 0.62 | 0.68 | 0.87 | 0.65 | 0.64 | 0.89 | |
| | 0.64 | 0.66 | 0.7 | 0.6 | 0.65 | 0.73 | |
| | |||||||
| Sensitivity | 0.68 | 0.59 | 0.51 | 0.47 | 0.55 | 0.48 | 0.52 |
| Specificity | 0.53 | 0.61 | 0.58 | 0.66 | 0.52 | 0.39 | 0.69 |
| | 0.6 | 0.6 | 0.54 | 0.57 | 0.54 | 0.44 | 0.61 |
Seven habitats were outlined by thresholding DCE feature maps (columns). For each habitat, the mean DCE feature values were computed (rows). Mean sensitivity, mean specificity, and mean AUC for classification between clinically insignificant and clinically significant cancer, based on MRI-guided biopsies. SVMs were used as classifiers with leave-1-out cross-validation. All patients in the study were included. The two features with the largest AUC amongst all habitats have been indicated in boldface.
Evaluation of pairs of DCE features for habitat H-AUCf
| 1.5 T ERC | 3 T | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sensitivity | ||||||||||||||
| | 0.42 | 0.74 | 0.64 | 0.75 | 0.70 | 0.60 | 0.64 | 0.66 | 0.76 | 0.61 | 0.70 | 0.74 | 0.65 | 0.74 |
| | 0.55 | 0.76 | 0.76 | 0.72 | 0.70 | 0.69 | 0.75 | 0.70 | 0.70 | 0.68 | ||||
| | 0.74 | 0.63 | 0.73 | 0.68 | 0.60 | 0.64 | 0.63 | 0.61 | 0.70 | 0.73 | ||||
| | 0.46 | 0.69 | 0.72 | 0.53 | 0.75 | 0.69 | ||||||||
| | 0.72 | 0.73 | 0.69 | 0.56 | 0.77 | 0.64 | ||||||||
| | 0.56 | 0.63 | 0.66 | 0.74 | ||||||||||
| | 0.65 | 0.58 | ||||||||||||
| Specificity | ||||||||||||||
| | 0.42 | 0.91 | 0.89 | 0.75 | 0.77 | 0.56 | 0.62 | 0.62 | 0.82 | 0.81 | 0.91 | 0.83 | 0.77 | 0.97 |
| | 0.74 | 0.72 | 0.81 | 0.86 | 0.70 | 0.98 | 0.98 | 0.84 | 0.83 | 0.94 | ||||
| | 0.88 | 0.77 | 0.84 | 0.87 | 0.84 | 0.68 | 0.93 | 0.85 | 0.82 | 0.95 | ||||
| | 0.48 | 0.66 | 0.67 | 0.87 | 0.91 | 0.94 | ||||||||
| | 0.76 | 0.79 | 0.84 | 0.65 | 0.83 | 0.93 | ||||||||
| | 0.64 | 0.63 | 0.64 | 0.91 | ||||||||||
| | 0.66 | 0.89 | ||||||||||||
| AUC | ||||||||||||||
| | 0.42 | 0.83 | 0.76 | 0.75 | 0.74 | 0.58 | 0.63 | 0.64 | 0.79 | 0.71 | 0.80 | 0.79 | 0.71 | 0.85 |
| | 0.64 | 0.74 | 0.79 | 0.79 | 0.70 | 0.83 | 0.87 | 0.77 | 0.76 | 0.81 | ||||
| | 0.81 | 0.70 | 0.78 | 0.78 | 0.72 | 0.66 | 0.78 | 0.73 | 0.76 | 0.84 | ||||
| | 0.47 | 0.67 | 0.69 | 0.70 | 0.83 | 0.82 | ||||||||
| | 0.74 | 0.76 | 0.76 | 0.60 | 0.80 | 0.79 | ||||||||
| | 0.60 | 0.63 | 0.65 | 0.83 | ||||||||||
| | 0.66 | 0.73 | ||||||||||||
Sensitivity, specificity, and AUC for classification between clinically insignificant and significant cancer is shown, based on MRI-guided biopsies. Support vector machines were used as classifiers. Leave-1-out cross-validation was used. The diagonal corresponds to the univariate case. The two features with the largest average AUC between 1.5 T and 3 T acquisitions have been indicated in boldface.