Literature DB >> 29109539

Controllable molecular motors engineered from myosin and RNA.

Tosan Omabegho1, Pinar S Gurel2,3, Clarence Y Cheng4, Laura Y Kim2, Paul V Ruijgrok1, Rhiju Das4, Gregory M Alushin2,3, Zev Bryant5,6.   

Abstract

Engineering biomolecular motors can provide direct tests of structure-function relationships and customized components for controlling molecular transport in artificial systems 1 or in living cells 2 . Previously, synthetic nucleic acid motors 3-5 and modified natural protein motors 6-10 have been developed in separate complementary strategies to achieve tunable and controllable motor function. Integrating protein and nucleic-acid components to form engineered nucleoprotein motors may enable additional sophisticated functionalities. However, this potential has only begun to be explored in pioneering work harnessing DNA scaffolds to dictate the spacing, number and composition of tethered protein motors 11-15 . Here, we describe myosin motors that incorporate RNA lever arms, forming hybrid assemblies in which conformational changes in the protein motor domain are amplified and redirected by nucleic acid structures. The RNA lever arm geometry determines the speed and direction of motor transport and can be dynamically controlled using programmed transitions in the lever arm structure 7,9 . We have characterized the hybrid motors using in vitro motility assays, single-molecule tracking, cryo-electron microscopy and structural probing 16 . Our designs include nucleoprotein motors that reversibly change direction in response to oligonucleotides that drive strand-displacement 17 reactions. In multimeric assemblies, the controllable motors walk processively along actin filaments at speeds of 10-20 nm s-1. Finally, to illustrate the potential for multiplexed addressable control, we demonstrate sequence-specific responses of RNA variants to oligonucleotide signals.

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Year:  2017        PMID: 29109539      PMCID: PMC5762270          DOI: 10.1038/s41565-017-0005-y

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  39 in total

1.  Geometric nomenclature and classification of RNA base pairs.

Authors:  N B Leontis; E Westhof
Journal:  RNA       Date:  2001-04       Impact factor: 4.942

Review 2.  Recent progress on DNA based walkers.

Authors:  Jing Pan; Feiran Li; Tae-Gon Cha; Haorong Chen; Jong Hyun Choi
Journal:  Curr Opin Biotechnol       Date:  2014-12-08       Impact factor: 9.740

3.  A DNA-based molecular motor that can navigate a network of tracks.

Authors:  Shelley F J Wickham; Jonathan Bath; Yousuke Katsuda; Masayuki Endo; Kumi Hidaka; Hiroshi Sugiyama; Andrew J Turberfield
Journal:  Nat Nanotechnol       Date:  2012-01-22       Impact factor: 39.213

4.  RNA nanostructures. A single-stranded architecture for cotranscriptional folding of RNA nanostructures.

Authors:  Cody Geary; Paul W K Rothemund; Ebbe S Andersen
Journal:  Science       Date:  2014-08-15       Impact factor: 47.728

Review 5.  Engineered, harnessed, and hijacked: synthetic uses for cytoskeletal systems.

Authors:  Brian S Goodman; Nathan D Derr; Samara L Reck-Peterson
Journal:  Trends Cell Biol       Date:  2012-10-08       Impact factor: 20.808

6.  Mechanical coordination in motor ensembles revealed using engineered artificial myosin filaments.

Authors:  R F Hariadi; R F Sommese; A S Adhikari; R E Taylor; S Sutton; J A Spudich; S Sivaramakrishnan
Journal:  Nat Nanotechnol       Date:  2015-07-06       Impact factor: 39.213

7.  Synthetic RNA-protein complex shaped like an equilateral triangle.

Authors:  Hirohisa Ohno; Tetsuhiro Kobayashi; Rinko Kabata; Kei Endo; Takuma Iwasa; Shige H Yoshimura; Kunio Takeyasu; Tan Inoue; Hirohide Saito
Journal:  Nat Nanotechnol       Date:  2011-01-16       Impact factor: 39.213

8.  Induced fit of RNA on binding the L7Ae protein to the kink-turn motif.

Authors:  Ben Turner; Sonya E Melcher; Timothy J Wilson; David G Norman; David M J Lilley
Journal:  RNA       Date:  2005-06-29       Impact factor: 4.942

9.  Remote control of myosin and kinesin motors using light-activated gearshifting.

Authors:  Muneaki Nakamura; Lu Chen; Stuart C Howes; Tony D Schindler; Eva Nogales; Zev Bryant
Journal:  Nat Nanotechnol       Date:  2014-08-03       Impact factor: 39.213

10.  Transport and self-organization across different length scales powered by motor proteins and programmed by DNA.

Authors:  Adam J M Wollman; Carlos Sanchez-Cano; Helen M J Carstairs; Robert A Cross; Andrew J Turberfield
Journal:  Nat Nanotechnol       Date:  2013-11-10       Impact factor: 39.213

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  7 in total

1.  Blind tests of RNA-protein binding affinity prediction.

Authors:  Kalli Kappel; Inga Jarmoskaite; Pavanapuresan P Vaidyanathan; William J Greenleaf; Daniel Herschlag; Rhiju Das
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-08       Impact factor: 11.205

Review 2.  Switchable DNA-origami nanostructures that respond to their environment and their applications.

Authors:  Jasleen Kaur Daljit Singh; Minh Tri Luu; Ali Abbas; Shelley F J Wickham
Journal:  Biophys Rev       Date:  2018-10-02

Review 3.  Synthetic biology approaches to dissecting linear motor protein function: towards the design and synthesis of artificial autonomous protein walkers.

Authors:  Heiner Linke; Birte Höcker; Ken'ya Furuta; Nancy R Forde; Paul M G Curmi
Journal:  Biophys Rev       Date:  2020-07-10

4.  Cryo-EM structures reveal specialization at the myosin VI-actin interface and a mechanism of force sensitivity.

Authors:  Pinar S Gurel; Laura Y Kim; Paul V Ruijgrok; Tosan Omabegho; Zev Bryant; Gregory M Alushin
Journal:  Elife       Date:  2017-12-04       Impact factor: 8.140

5.  Optical control of fast and processive engineered myosins in vitro and in living cells.

Authors:  Paul V Ruijgrok; Rajarshi P Ghosh; Sasha Zemsky; Muneaki Nakamura; Rui Gong; Lin Ning; Robert Chen; Vipul T Vachharajani; Alexander E Chu; Namrata Anand; Raphael R Eguchi; Po-Ssu Huang; Michael Z Lin; Gregory M Alushin; Jan T Liphardt; Zev Bryant
Journal:  Nat Chem Biol       Date:  2021-02-18       Impact factor: 15.040

6.  The energy landscape of -1 ribosomal frameshifting.

Authors:  Junhong Choi; Sinéad O'Loughlin; John F Atkins; Joseph D Puglisi
Journal:  Sci Adv       Date:  2020-01-01       Impact factor: 14.136

7.  The C-terminal actin-binding domain of talin forms an asymmetric catch bond with F-actin.

Authors:  Leanna M Owen; Nicolas A Bax; William I Weis; Alexander R Dunn
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-04       Impact factor: 12.779

  7 in total

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