Literature DB >> 30280371

Switchable DNA-origami nanostructures that respond to their environment and their applications.

Jasleen Kaur Daljit Singh1,2,3, Minh Tri Luu1,2,3, Ali Abbas1,3, Shelley F J Wickham4,5,6.   

Abstract

Structural DNA nanotechnology, in which Watson-Crick base pairing drives the formation of self-assembling nanostructures, has rapidly expanded in complexity and functionality since its inception in 1981. DNA nanostructures can now be made in arbitrary three-dimensional shapes and used to scaffold many other functional molecules such as proteins, metallic nanoparticles, polymers, fluorescent dyes and small molecules. In parallel, the field of dynamic DNA nanotechnology has built DNA circuits, motors and switches. More recently, these two areas have begun to merge-to produce switchable DNA nanostructures, which change state in response to their environment. In this review, we summarise switchable DNA nanostructures into two major classes based on response type: molecular actuation triggered by local chemical changes such as pH or concentration and external actuation driven by light, electric or magnetic fields. While molecular actuation has been well explored, external actuation of DNA nanostructures is a relatively new area that allows for the remote control of nanoscale devices. We discuss recent applications for DNA nanostructures where switching is used to perform specific functions-such as opening a capsule to deliver a molecular payload to a target cell. We then discuss challenges and future directions towards achieving synthetic nanomachines with complexity on the level of the protein machinery in living cells.

Entities:  

Keywords:  Actuation; DNA nanotechnology; DNA origami; Nanomachines; Switchable nanostructures

Year:  2018        PMID: 30280371      PMCID: PMC6233340          DOI: 10.1007/s12551-018-0462-z

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  90 in total

1.  Aptamer beacons for the direct detection of proteins.

Authors:  N Hamaguchi; A Ellington; M Stanton
Journal:  Anal Biochem       Date:  2001-07-15       Impact factor: 3.365

2.  A revertible, autonomous, self-assembled DNA-origami nanoactuator.

Authors:  Monica Marini; Luca Piantanida; Rita Musetti; Alpan Bek; Mingdong Dong; Flemming Besenbacher; Marco Lazzarino; Giuseppe Firrao
Journal:  Nano Lett       Date:  2011-11-04       Impact factor: 11.189

Review 3.  DNA nanomachines.

Authors:  Jonathan Bath; Andrew J Turberfield
Journal:  Nat Nanotechnol       Date:  2007-05       Impact factor: 39.213

4.  Dynamic DNA devices and assemblies formed by shape-complementary, non-base pairing 3D components.

Authors:  Thomas Gerling; Klaus F Wagenbauer; Andrea M Neuner; Hendrik Dietz
Journal:  Science       Date:  2015-03-27       Impact factor: 47.728

5.  Programmable motion of DNA origami mechanisms.

Authors:  Alexander E Marras; Lifeng Zhou; Hai-Jun Su; Carlos E Castro
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-05       Impact factor: 11.205

6.  pH-Driven Actuation of DNA Origami via Parallel I-Motif Sequences in Solution and on Surfaces.

Authors:  Jacob M Majikes; Lucas C C Ferraz; Thomas H LaBean
Journal:  Bioconjug Chem       Date:  2017-06-27       Impact factor: 4.774

7.  A DNA-based molecular motor that can navigate a network of tracks.

Authors:  Shelley F J Wickham; Jonathan Bath; Yousuke Katsuda; Masayuki Endo; Kumi Hidaka; Hiroshi Sugiyama; Andrew J Turberfield
Journal:  Nat Nanotechnol       Date:  2012-01-22       Impact factor: 39.213

8.  A cargo-sorting DNA robot.

Authors:  Anupama J Thubagere; Wei Li; Robert F Johnson; Zibo Chen; Shayan Doroudi; Yae Lim Lee; Gregory Izatt; Sarah Wittman; Niranjan Srinivas; Damien Woods; Erik Winfree; Lulu Qian
Journal:  Science       Date:  2017-09-15       Impact factor: 47.728

9.  Single-Molecule Observation of the Photoregulated Conformational Dynamics of DNA Origami Nanoscissors.

Authors:  Elena M Willner; Yuu Kamada; Yuki Suzuki; Tomoko Emura; Kumi Hidaka; Hendrik Dietz; Hiroshi Sugiyama; Masayuki Endo
Journal:  Angew Chem Int Ed Engl       Date:  2017-10-30       Impact factor: 15.336

10.  Light-Triggered Release of Bioactive Molecules from DNA Nanostructures.

Authors:  Richie E Kohman; Susie S Cha; Heng-Ye Man; Xue Han
Journal:  Nano Lett       Date:  2016-03-03       Impact factor: 11.189

View more
  6 in total

1.  Binding of DNA origami to lipids: maximizing yield and switching via strand displacement.

Authors:  Jasleen Kaur Daljit Singh; Esther Darley; Pietro Ridone; James P Gaston; Ali Abbas; Shelley F J Wickham; Matthew A B Baker
Journal:  Nucleic Acids Res       Date:  2021-11-08       Impact factor: 16.971

2.  Engineering Biorthogonal Phage-Based Nanobots for Ultrasensitive, In Situ Bacteria Detection.

Authors:  Hannah S Zurier; Michelle M Duong; Julie M Goddard; Sam R Nugen
Journal:  ACS Appl Bio Mater       Date:  2020-06-23

3.  Rapid DNA origami nanostructure detection and classification using the YOLOv5 deep convolutional neural network.

Authors:  Matthew Chiriboga; Christopher M Green; David A Hastman; Divita Mathur; Qi Wei; Sebastían A Díaz; Igor L Medintz; Remi Veneziano
Journal:  Sci Rep       Date:  2022-03-09       Impact factor: 4.379

Review 4.  The Fusion of Lipid and DNA Nanotechnology.

Authors:  Es Darley; Jasleen Kaur Daljit Singh; Natalie A Surace; Shelley F J Wickham; Matthew A B Baker
Journal:  Genes (Basel)       Date:  2019-12-03       Impact factor: 4.096

Review 5.  The biological applications of DNA nanomaterials: current challenges and future directions.

Authors:  Wenjuan Ma; Yuxi Zhan; Yuxin Zhang; Chenchen Mao; Xueping Xie; Yunfeng Lin
Journal:  Signal Transduct Target Ther       Date:  2021-10-08

6.  Minimizing Cholesterol-Induced Aggregation of Membrane-Interacting DNA Origami Nanostructures.

Authors:  Jasleen Kaur Daljit Singh; Minh Tri Luu; Jonathan F Berengut; Ali Abbas; Matthew A B Baker; Shelley F J Wickham
Journal:  Membranes (Basel)       Date:  2021-11-30
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.