Literature DB >> 21240283

Synthetic RNA-protein complex shaped like an equilateral triangle.

Hirohisa Ohno1, Tetsuhiro Kobayashi, Rinko Kabata, Kei Endo, Takuma Iwasa, Shige H Yoshimura, Kunio Takeyasu, Tan Inoue, Hirohide Saito.   

Abstract

Synthetic nanostructures consisting of biomacromolecules such as nucleic acids have been constructed using bottom-up approaches. In particular, Watson-Crick base pairing has been used to construct a variety of two- and three-dimensional DNA nanostructures. Here, we show that RNA and the ribosomal protein L7Ae can form a nanostructure shaped like an equilateral triangle that consists of three proteins bound to an RNA scaffold. The construction of the complex relies on the proteins binding to kink-turn (K-turn) motifs in the RNA, which allows the RNA to bend by ∼ 60° at three positions to form a triangle. Functional RNA-protein complexes constructed with this approach could have applications in nanomedicine and synthetic biology.

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Year:  2011        PMID: 21240283     DOI: 10.1038/nnano.2010.268

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  36 in total

1.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

2.  Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea.

Authors:  Timofey S Rozhdestvensky; Thean Hock Tang; Inna V Tchirkova; Jürgen Brosius; Jean-Pierre Bachellerie; Alexander Hüttenhofer
Journal:  Nucleic Acids Res       Date:  2003-02-01       Impact factor: 16.971

3.  Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA.

Authors:  Terrie Moore; Yanming Zhang; Marcia O Fenley; Hong Li
Journal:  Structure       Date:  2004-05       Impact factor: 5.006

4.  Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication.

Authors:  R P Goodman; I A T Schaap; C F Tardin; C M Erben; R M Berry; C F Schmidt; A J Turberfield
Journal:  Science       Date:  2005-12-09       Impact factor: 47.728

Review 5.  RNA nanotechnology: engineering, assembly and applications in detection, gene delivery and therapy.

Authors:  Peixuan Guo
Journal:  J Nanosci Nanotechnol       Date:  2005-12

6.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

7.  Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes.

Authors:  Robert Penchovsky; Ronald R Breaker
Journal:  Nat Biotechnol       Date:  2005-10-23       Impact factor: 54.908

8.  Nanoscale arrangement of apoptotic ligands reveals a demand for a minimal lateral distance for efficient death receptor activation.

Authors:  Julia Ranzinger; Anja Krippner-Heidenreich; Tamas Haraszti; Eva Bock; Jessica Tepperink; Joachim P Spatz; Peter Scheurich
Journal:  Nano Lett       Date:  2009-12       Impact factor: 11.189

9.  Reversible switching of pRNA activity on the DNA packaging motor of bacteriophage phi29.

Authors:  Seung Hyeon Ko; Yi Chen; Dan Shu; Peixuan Guo; Chengde Mao
Journal:  J Am Chem Soc       Date:  2008-12-31       Impact factor: 15.419

10.  Induced fit of RNA on binding the L7Ae protein to the kink-turn motif.

Authors:  Ben Turner; Sonya E Melcher; Timothy J Wilson; David G Norman; David M J Lilley
Journal:  RNA       Date:  2005-06-29       Impact factor: 4.942

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  44 in total

Review 1.  Beyond DNA origami: the unfolding prospects of nucleic acid nanotechnology.

Authors:  Nicole Michelotti; Alexander Johnson-Buck; Anthony J Manzo; Nils G Walter
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2011-11-30

Review 2.  DNA nanotechnology from the test tube to the cell.

Authors:  Yuan-Jyue Chen; Benjamin Groves; Richard A Muscat; Georg Seelig
Journal:  Nat Nanotechnol       Date:  2015-09       Impact factor: 39.213

3.  Crystal-Structure-Guided Design of Self-Assembling RNA Nanotriangles.

Authors:  Mark A Boerneke; Sergey M Dibrov; Thomas Hermann
Journal:  Angew Chem Int Ed Engl       Date:  2016-02-23       Impact factor: 15.336

4.  The right angle (RA) motif: a prevalent ribosomal RNA structural pattern found in group I introns.

Authors:  Wade W Grabow; Zhuoyun Zhuang; Zoe N Swank; Joan-Emma Shea; Luc Jaeger
Journal:  J Mol Biol       Date:  2012-09-18       Impact factor: 5.469

5.  Nucleic acid-based nanoengineering: novel structures for biomedical applications.

Authors:  Hanying Li; Thomas H Labean; Kam W Leong
Journal:  Interface Focus       Date:  2011-06-28       Impact factor: 3.906

Review 6.  Uniqueness, advantages, challenges, solutions, and perspectives in therapeutics applying RNA nanotechnology.

Authors:  Peixuan Guo; Farzin Haque; Brent Hallahan; Randall Reif; Hui Li
Journal:  Nucleic Acid Ther       Date:  2012-08       Impact factor: 5.486

Review 7.  Convergence of nanotechnology and cancer prevention: are we there yet?

Authors:  David G Menter; Sherri L Patterson; Craig D Logsdon; Scott Kopetz; Anil K Sood; Ernest T Hawk
Journal:  Cancer Prev Res (Phila)       Date:  2014-07-24

8.  Triggering nucleic acid nanostructure assembly by conditional kissing interactions.

Authors:  Laurent Azéma; Servane Bonnet-Salomon; Masayuki Endo; Yosuke Takeuchi; Guillaume Durand; Tomoko Emura; Kumi Hidaka; Eric Dausse; Hiroshi Sugiyama; Jean-Jacques Toulmé
Journal:  Nucleic Acids Res       Date:  2018-02-16       Impact factor: 16.971

9.  Picomolar Fingerprinting of Nucleic Acid Nanoparticles Using Solid-State Nanopores.

Authors:  Mohammad Amin Alibakhshi; Justin R Halman; James Wilson; Aleksei Aksimentiev; Kirill A Afonin; Meni Wanunu
Journal:  ACS Nano       Date:  2017-09-11       Impact factor: 15.881

10.  RNA and DNA nanoparticles for triggering RNA interference.

Authors:  Ziad El Tannir; Kirill A Afonin; Bruce A Shapiro
Journal:  RNA Dis       Date:  2015-11-29
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