Literature DB >> 29056873

Characterization of Protein Nanocrystals Based on the Reversibility of Crystallization.

Katerina Dörner1,2, Jose M Martin-Garcia1,2,3, Christopher Kupitz1, Zhen Gong1,2, T Conn Mallet4, Liqing Chen1,2, Rebekka M Wachter1,2, Petra Fromme1,2,3.   

Abstract

A new approach is described to screen for protein nanocrystals based on the reversibility of crystallization. Methods to characterize nanocrystals are in strong need to facilitate sample preparation for serial femtosecond X-ray nanocrystallography (SFX). SFX enables protein structure determination by collecting X-ray diffraction from nano- and microcrystals using a free electron laser. This technique is especially valuable for challenging proteins as for example membrane proteins and is in general a powerful method to overcome the radiation damage problem and to perform time-resolved structure analysis. Nanocrystal growth cannot be monitored with common methods used in protein crystallography, as the resolution of bright field microscopy is not sufficient. A high-performance method to screen for nanocrystals is second order nonlinear imaging of chiral crystals (SONICC). However, the high cost prevents its use in every laboratory, and some protein nanocrystals may be "invisible" to SONICC. In this work using a crystallization robot and a common imaging system precipitation comprised of nanocrystals and precipitation caused by aggregated protein can be distinguished.

Entities:  

Year:  2016        PMID: 29056873      PMCID: PMC5649632          DOI: 10.1021/acs.cgd.6b00384

Source DB:  PubMed          Journal:  Cryst Growth Des        ISSN: 1528-7483            Impact factor:   4.076


  39 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  Do more complex organisms have a greater proportion of membrane proteins in their genomes?

Authors:  T J Stevens; I T Arkin
Journal:  Proteins       Date:  2000-06-01

3.  Three-dimensional high-resolution second-harmonic generation imaging of endogenous structural proteins in biological tissues.

Authors:  Paul J Campagnola; Andrew C Millard; Mark Terasaki; Pamela E Hoppe; Christian J Malone; William A Mohler
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

4.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

5.  Drug-target network.

Authors:  Muhammed A Yildirim; Kwang-Il Goh; Michael E Cusick; Albert-László Barabási; Marc Vidal
Journal:  Nat Biotechnol       Date:  2007-10       Impact factor: 54.908

6.  Membrane-protein structure determination by solid-state NMR spectroscopy of microcrystals.

Authors:  Shakeel Ahmad Shahid; Benjamin Bardiaux; W Trent Franks; Ludwig Krabben; Michael Habeck; Barth-Jan van Rossum; Dirk Linke
Journal:  Nat Methods       Date:  2012-11-11       Impact factor: 28.547

Review 7.  Micro-crystallography comes of age.

Authors:  Janet L Smith; Robert F Fischetti; Masaki Yamamoto
Journal:  Curr Opin Struct Biol       Date:  2012-09-26       Impact factor: 6.809

8.  Solid state NMR sequential resonance assignments and conformational analysis of the 2x10.4 kDa dimeric form of the Bacillus subtilis protein Crh.

Authors:  Anja Böckmann; Adam Lange; Anne Galinier; Sorin Luca; Nicolas Giraud; Michel Juy; Henrike Heise; Roland Montserret; François Penin; Marc Baldus
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

9.  Protein crystallization analysis on the World Community Grid.

Authors:  Christian A Cumbaa; Igor Jurisica
Journal:  J Struct Funct Genomics       Date:  2010-01-14

10.  Purification and biophysical characterization of the CapA membrane protein FTT0807 from Francisella tularensis.

Authors:  Jose M Martin-Garcia; Debra T Hansen; James Zook; Andrey V Loskutov; Mark D Robida; Felicia M Craciunescu; Kathryn F Sykes; Rebekka M Wachter; Petra Fromme; James P Allen
Journal:  Biochemistry       Date:  2014-03-18       Impact factor: 3.162

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  1 in total

Review 1.  MicroED in natural product and small molecule research.

Authors:  Emma Danelius; Steve Halaby; Wilfred A van der Donk; Tamir Gonen
Journal:  Nat Prod Rep       Date:  2020-09-17       Impact factor: 13.423

  1 in total

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