Literature DB >> 28984134

Ultrafast CO Kinetics in Heme Proteins: Adiabatic Ligand Binding and Heavy Atom Tunneling.

Abdelkrim Benabbas1, Yuhan Sun1, Thomas L Poulos2, Paul M Champion1.   

Abstract

The ultrafast kinetics of CO rebinding to carbon monoxide oxidation activator protein (ChCooA) are measured over a wide temperature range and compared with the kinetics of CO binding in other heme systems such as myoglobin (Mb) and hemoglobin (Hb). The Arrhenius prefactor for CO binding to ChCooA and protoheme (∼1011 s-1) is similar to what is found for spin-allowed NO binding to heme proteins and is several orders of magnitude larger than the prefactor of Mb and Hb (∼109 s-1). This indicates that the CO binding reaction is adiabatic, in contrast to the commonly held view that it is nonadiabatic due to spin-forbidden (ΔS = 2) selection rules. Under the adiabatic condition, entropic factors, rather than spin-selection rules, are the source of the reduced Arrhenius prefactors associated with CO binding in Mb and Hb. The kinetic response of ChCooA-CO is nonexponential at all temperatures, including 298 K, and is described quantitatively using a distribution of enthalpic rebinding barriers associated with heterogeneity in the heme doming conformation. Above the solvent glass transition (Tg ∼ 180 K), the rebinding progress slows as temperature increases, and this is ascribed to an evolution of the distribution toward increased heme doming and larger enthalpic barriers. Between Tg and ∼60 K, the nonexponential rebinding slows down as the temperature is lowered and the survival fraction follows the predictions expected for a quenched barrier distribution. Below ∼60 K the rebinding kinetics do not follow these predictions unless quantum mechanical tunneling along the heme doming coordinate is also included as an active channel for CO binding.

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Year:  2017        PMID: 28984134      PMCID: PMC5976446          DOI: 10.1021/jacs.7b07507

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  45 in total

1.  Different relaxations in myoglobin after photolysis.

Authors:  Matteo Levantino; Antonio Cupane; László Zimányi; Pál Ormos
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-22       Impact factor: 11.205

2.  Effect of DNA binding on geminate CO recombination kinetics in CO-sensing transcription factor CooA.

Authors:  Abdelkrim Benabbas; Venugopal Karunakaran; Hwan Youn; Thomas L Poulos; Paul M Champion
Journal:  J Biol Chem       Date:  2012-04-28       Impact factor: 5.157

3.  Ligand dynamics in an electron transfer protein. Picosecond geminate recombination of carbon monoxide to heme in mutant forms of cytochrome c.

Authors:  Gary Silkstone; Audrius Jasaitis; Michael T Wilson; Marten H Vos
Journal:  J Biol Chem       Date:  2006-11-17       Impact factor: 5.157

4.  Understanding the kinetics of spin-forbidden chemical reactions.

Authors:  Jeremy N Harvey
Journal:  Phys Chem Chem Phys       Date:  2006-11-20       Impact factor: 3.676

5.  Tunneling in ligand binding to heme proteins.

Authors:  N Alberding; R H Austin; K W Beeson; S S Chan; L Eisenstein; H Frauenfelder; T M Nordlund
Journal:  Science       Date:  1976-06-04       Impact factor: 47.728

6.  Ligand binding to heme proteins. VI. Interconversion of taxonomic substates in carbonmonoxymyoglobin.

Authors:  J B Johnson; D C Lamb; H Frauenfelder; J D Müller; B McMahon; G U Nienhaus; R D Young
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

7.  Direct observations of ligand dynamics in hemoglobin by subpicosecond infrared spectroscopy.

Authors:  P A Anfinrud; C Han; R M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  1989-11       Impact factor: 11.205

8.  Spin-dependent mechanism for diatomic ligand binding to heme.

Authors:  Stefan Franzen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

9.  Ultrafast dynamics of diatomic ligand binding to nitrophorin 4.

Authors:  Abdelkrim Benabbas; Xiong Ye; Minoru Kubo; Zhenyu Zhang; Estelle M Maes; William R Montfort; Paul M Champion
Journal:  J Am Chem Soc       Date:  2010-03-03       Impact factor: 15.419

10.  Subpicosecond oxygen trapping in the heme pocket of the oxygen sensor FixL observed by time-resolved resonance Raman spectroscopy.

Authors:  Sergei G Kruglik; Audrius Jasaitis; Klara Hola; Taku Yamashita; Ursula Liebl; Jean-Louis Martin; Marten H Vos
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-19       Impact factor: 11.205

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  1 in total

1.  A mechanism for CO regulation of ion channels.

Authors:  Sofia M Kapetanaki; Mark J Burton; Jaswir Basran; Chiasa Uragami; Peter C E Moody; John S Mitcheson; Ralf Schmid; Noel W Davies; Pierre Dorlet; Marten H Vos; Nina M Storey; Emma Raven
Journal:  Nat Commun       Date:  2018-03-02       Impact factor: 14.919

  1 in total

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