Literature DB >> 17446273

Subpicosecond oxygen trapping in the heme pocket of the oxygen sensor FixL observed by time-resolved resonance Raman spectroscopy.

Sergei G Kruglik1, Audrius Jasaitis, Klara Hola, Taku Yamashita, Ursula Liebl, Jean-Louis Martin, Marten H Vos.   

Abstract

Dissociation of oxygen from the heme domain of the bacterial oxygen sensor protein FixL constitutes the first step in hypoxia-induced signaling. In the present study, the photodissociation of the heme-O2 bond was used to synchronize this event, and time-resolved resonance Raman (TR(3)) spectroscopy with subpicosecond time resolution was implemented to characterize the heme configuration of the primary photoproduct. TR(3) measurements on heme-oxycomplexes are highly challenging and have not yet been reported. Whereas in all other known six-coordinated heme protein complexes with diatomic ligands, including the oxymyoglobin reported here, heme iron out-of-plane motion (doming) occurs faster than 1 ps after iron-ligand bond breaking; surprisingly, no sizeable doming is observed in the oxycomplex of the Bradyrhizobium japonicum FixL sensor domain (FixLH). This assessment is deduced from the absence of the iron-histidine band around 217 cm(-1) as early as 0.5 ps. We suggest that efficient ultrafast oxygen rebinding to the heme occurs on the femtosecond time scale, thus hindering heme doming. Comparing WT oxy-FixLH, mutant proteins FixLH-R220H and FixLH-R220Q, the respective carbonmonoxy-complexes, and oxymyoglobin, we show that a hydrogen bond of the terminal oxygen atom with the residue in position 220 is responsible for the observed behavior; in WT FixL this residue is arginine, crucially implicated in signal transmission. We propose that the rigid O2 configuration imposed by this residue, in combination with the hydrophobic and constrained properties of the distal cavity, keep dissociated oxygen in place. These results uncover the origin of the "oxygen cage" properties of this oxygen sensor protein.

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Year:  2007        PMID: 17446273      PMCID: PMC1863486          DOI: 10.1073/pnas.0700445104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

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2.  Doming modes and dynamics of model heme compounds.

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Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-18       Impact factor: 11.205

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Journal:  Nature       Date:  1981-07-02       Impact factor: 49.962

7.  Photodissociation of heme distal methionine in ferrous cytochrome C revealed by subpicosecond time-resolved resonance Raman spectroscopy.

Authors:  Simona Cianetti; Michel Négrerie; Marten H Vos; Jean-Louis Martin; Sergei G Kruglik
Journal:  J Am Chem Soc       Date:  2004-11-03       Impact factor: 15.419

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Journal:  Biochemistry       Date:  1988-05-31       Impact factor: 3.162

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Journal:  Biochemistry       Date:  1994-07-05       Impact factor: 3.162

10.  Structure-based mechanism of O2 sensing and ligand discrimination by the FixL heme domain of Bradyrhizobium japonicum.

Authors:  Bing Hao; Clara Isaza; Joseph Arndt; Michael Soltis; Michael K Chan
Journal:  Biochemistry       Date:  2002-10-29       Impact factor: 3.162

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  6 in total

1.  Ultrafast ligand dynamics in the heme-based GAF sensor domains of the histidine kinases DosS and DosT from Mycobacterium tuberculosis.

Authors:  Marten H Vos; Latifa Bouzhir-Sima; Jean-Christophe Lambry; Hao Luo; Julian J Eaton-Rye; Alexandra Ioanoviciu; Paul R Ortiz de Montellano; Ursula Liebl
Journal:  Biochemistry       Date:  2011-12-09       Impact factor: 3.162

2.  Effect of DNA binding on geminate CO recombination kinetics in CO-sensing transcription factor CooA.

Authors:  Abdelkrim Benabbas; Venugopal Karunakaran; Hwan Youn; Thomas L Poulos; Paul M Champion
Journal:  J Biol Chem       Date:  2012-04-28       Impact factor: 5.157

3.  Picosecond primary structural transition of the heme is retarded after nitric oxide binding to heme proteins.

Authors:  Sergei G Kruglik; Byung-Kuk Yoo; Stefan Franzen; Marten H Vos; Jean-Louis Martin; Michel Negrerie
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

4.  Ultrafast dynamics of diatomic ligand binding to nitrophorin 4.

Authors:  Abdelkrim Benabbas; Xiong Ye; Minoru Kubo; Zhenyu Zhang; Estelle M Maes; William R Montfort; Paul M Champion
Journal:  J Am Chem Soc       Date:  2010-03-03       Impact factor: 15.419

5.  Measurements of heme relaxation and ligand recombination in strong magnetic fields.

Authors:  Zhenyu Zhang; Abdelkrim Benabbas; Xiong Ye; Anchi Yu; Paul M Champion
Journal:  J Phys Chem B       Date:  2009-08-06       Impact factor: 2.991

6.  Ultrafast CO Kinetics in Heme Proteins: Adiabatic Ligand Binding and Heavy Atom Tunneling.

Authors:  Abdelkrim Benabbas; Yuhan Sun; Thomas L Poulos; Paul M Champion
Journal:  J Am Chem Soc       Date:  2017-10-24       Impact factor: 15.419

  6 in total

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