Literature DB >> 17114183

Ligand dynamics in an electron transfer protein. Picosecond geminate recombination of carbon monoxide to heme in mutant forms of cytochrome c.

Gary Silkstone1, Audrius Jasaitis, Michael T Wilson, Marten H Vos.   

Abstract

Substitution of the heme coordination residue Met-80 of the electron transport protein yeast iso-1-cytochrome c allows external ligands like CO to bind and thus increase the effective redox potential. This mutation, in principle, turns the protein into a quasi-native photoactivable electron donor. We have studied the kinetic and spectral characteristics of geminate recombination of heme and CO in a series of single M80X (X = Ala, Ser, Asp, Arg) mutants, using femtosecond transient absorption spectroscopy. In these proteins, all geminate recombination occurs on the picosecond and early nanosecond time scale, in a multiphasic manner, in which heme relaxation takes place on the same time scale. The extent of geminate recombination varies from >99% (Ala, Ser) to approximately 70% (Arg), the latter value being in principle low enough for electron injection studies. The rates and extent of the CO geminate recombination phases are much higher than in functional ligand-binding proteins like myoglobin, presumably reflecting the rigid and hydrophobic properties of the heme environment, which are optimized for electron transfer. Thus, the dynamics of CO recombination in cytochrome c are a tool for studying the heme pocket, in a similar way as NO in myoglobin. We discuss the differences in the CO kinetics between the mutants in terms of the properties of the heme environment and strategies to enhance the CO escape yield. Experiments on double mutants in which Phe-82 is replaced by Asp or Gly as well as the M80D substitution indicate that such steric changes substantially increase the motional freedom-dissociated CO.

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Year:  2006        PMID: 17114183     DOI: 10.1074/jbc.M605760200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  11 in total

1.  Ultrafast ligand dynamics in the heme-based GAF sensor domains of the histidine kinases DosS and DosT from Mycobacterium tuberculosis.

Authors:  Marten H Vos; Latifa Bouzhir-Sima; Jean-Christophe Lambry; Hao Luo; Julian J Eaton-Rye; Alexandra Ioanoviciu; Paul R Ortiz de Montellano; Ursula Liebl
Journal:  Biochemistry       Date:  2011-12-09       Impact factor: 3.162

2.  Nitric oxide binds to the proximal heme coordination site of the ferrocytochrome c/cardiolipin complex: formation mechanism and dynamics.

Authors:  Gary Silkstone; Sofia M Kapetanaki; Ivan Husu; Marten H Vos; Michael T Wilson
Journal:  J Biol Chem       Date:  2010-04-15       Impact factor: 5.157

3.  Dynamics of the heme-binding bacterial gas-sensing dissimilative nitrate respiration regulator (DNR) and activation barriers for ligand binding and escape.

Authors:  Laura Lobato; Latifa Bouzhir-Sima; Taku Yamashita; Michael T Wilson; Marten H Vos; Ursula Liebl
Journal:  J Biol Chem       Date:  2014-07-18       Impact factor: 5.157

4.  Ultrafast photochemistry of the bc1 complex.

Authors:  Marten H Vos; Brandon J Reeder; Fevzi Daldal; Ursula Liebl
Journal:  Phys Chem Chem Phys       Date:  2017-03-01       Impact factor: 3.676

5.  Investigations of low-frequency vibrational dynamics and ligand binding kinetics of cystathionine beta-synthase.

Authors:  Venugopal Karunakaran; Abdelkrim Benabbas; Yuhan Sun; Zhenyu Zhang; Sangita Singh; Ruma Banerjee; Paul M Champion
Journal:  J Phys Chem B       Date:  2010-03-11       Impact factor: 2.991

6.  Ultrafast dynamics of diatomic ligand binding to nitrophorin 4.

Authors:  Abdelkrim Benabbas; Xiong Ye; Minoru Kubo; Zhenyu Zhang; Estelle M Maes; William R Montfort; Paul M Champion
Journal:  J Am Chem Soc       Date:  2010-03-03       Impact factor: 15.419

Review 7.  The role of key residues in structure, function, and stability of cytochrome-c.

Authors:  Sobia Zaidi; Md Imtaiyaz Hassan; Asimul Islam; Faizan Ahmad
Journal:  Cell Mol Life Sci       Date:  2013-04-25       Impact factor: 9.261

8.  Measurements of heme relaxation and ligand recombination in strong magnetic fields.

Authors:  Zhenyu Zhang; Abdelkrim Benabbas; Xiong Ye; Anchi Yu; Paul M Champion
Journal:  J Phys Chem B       Date:  2009-08-06       Impact factor: 2.991

9.  Ultrafast CO Kinetics in Heme Proteins: Adiabatic Ligand Binding and Heavy Atom Tunneling.

Authors:  Abdelkrim Benabbas; Yuhan Sun; Thomas L Poulos; Paul M Champion
Journal:  J Am Chem Soc       Date:  2017-10-24       Impact factor: 15.419

10.  A mechanism for CO regulation of ion channels.

Authors:  Sofia M Kapetanaki; Mark J Burton; Jaswir Basran; Chiasa Uragami; Peter C E Moody; John S Mitcheson; Ralf Schmid; Noel W Davies; Pierre Dorlet; Marten H Vos; Nina M Storey; Emma Raven
Journal:  Nat Commun       Date:  2018-03-02       Impact factor: 14.919

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