Literature DB >> 28957631

Editing the Genome Without Double-Stranded DNA Breaks.

Alexis C Komor1, Ahmed H Badran2, David R Liu2,3,4.   

Abstract

Genome editing methods have commonly relied on the initial introduction of double-stranded DNA breaks (DSBs), resulting in stochastic insertions, deletions, and translocations at the target genomic locus. To achieve gene correction, these methods typically require the introduction of exogenous DNA repair templates and low-efficiency homologous recombination processes. In this review, we describe alternative, mechanistically motivated strategies to perform chemistry on the genome of unmodified cells without introducing DSBs. One such strategy, base editing, uses chemical and biological insights to directly and permanently convert one target base pair to another. Despite its recent introduction, base editing has already enabled a number of new capabilities and applications in the genome editing community. We summarize these advances here and discuss the new possibilities that this method has unveiled, concluding with a brief analysis of future prospects for genome and transcriptome editing without double-stranded DNA cleavage.

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Year:  2017        PMID: 28957631      PMCID: PMC5891729          DOI: 10.1021/acschembio.7b00710

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  79 in total

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Review 2.  Genetic manipulation of genomes with rare-cutting endonucleases.

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3.  Genome-wide target specificities of CRISPR RNA-guided programmable deaminases.

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4.  Improving site-directed RNA editing in vitro and in cell culture by chemical modification of the guideRNA.

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5.  Targeted AID-mediated mutagenesis (TAM) enables efficient genomic diversification in mammalian cells.

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6.  Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems.

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8.  The RNA Modification Database, RNAMDB: 2011 update.

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9.  Repurposing the CRISPR-Cas9 system for targeted DNA methylation.

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10.  Construction of a guide-RNA for site-directed RNA mutagenesis utilising intracellular A-to-I RNA editing.

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Journal:  Sci Rep       Date:  2017-02-02       Impact factor: 4.379

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  44 in total

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2.  BE-PLUS: a new base editing tool with broadened editing window and enhanced fidelity.

Authors:  Wen Jiang; Songjie Feng; Shisheng Huang; Wenxia Yu; Guanglei Li; Guang Yang; Yajing Liu; Yu Zhang; Lei Zhang; Yu Hou; Jia Chen; Jieping Chen; Xingxu Huang
Journal:  Cell Res       Date:  2018-06-06       Impact factor: 25.617

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Review 4.  Barriers to genome editing with CRISPR in bacteria.

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Review 5.  Modeling Psychiatric Disorder Biology with Stem Cells.

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Review 6.  Precision Control of CRISPR-Cas9 Using Small Molecules and Light.

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Journal:  Biochemistry       Date:  2019-01-22       Impact factor: 3.162

7.  THE GORDON WILSON LECTURE: THE ETHICS OF HUMAN GENOME EDITING.

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Review 8.  Application of genome-editing systems to enhance available pig resources for agriculture and biomedicine.

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Journal:  Reprod Fertil Dev       Date:  2019-01       Impact factor: 2.311

Review 9.  Advances in genome editing for genetic hearing loss.

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Review 10.  Novel genome-editing-based approaches to treat motor neuron diseases: Promises and challenges.

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