Literature DB >> 28850885

Quantifying behavior to solve sensorimotor transformations: advances from worms and flies.

Adam J Calhoun1, Mala Murthy2.   

Abstract

The development of new computational tools has recently opened up the study of natural behaviors at a precision that was previously unachievable. These tools permit a highly quantitative analysis of behavioral dynamics at timescales that are well matched to the timescales of neural activity. Here we examine how combining these methods with established techniques for estimating an animal's sensory experience presents exciting new opportunities for dissecting the sensorimotor transformations performed by the nervous system. We focus this review primarily on examples from Caenorhabditis elegans and Drosophila melanogaster-for these model systems, computational approaches to characterize behavior, in combination with unparalleled genetic tools for neural activation, silencing, and recording, have already proven instrumental for illuminating underlying neural mechanisms.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28850885      PMCID: PMC5765764          DOI: 10.1016/j.conb.2017.08.006

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  84 in total

1.  Discovery of brainwide neural-behavioral maps via multiscale unsupervised structure learning.

Authors:  Joshua T Vogelstein; Youngser Park; Tomoko Ohyama; Rex A Kerr; James W Truman; Carey E Priebe; Marta Zlatic
Journal:  Science       Date:  2014-03-27       Impact factor: 47.728

2.  Mapping the Neural Substrates of Behavior.

Authors:  Alice A Robie; Jonathan Hirokawa; Austin W Edwards; Lowell A Umayam; Allen Lee; Mary L Phillips; Gwyneth M Card; Wyatt Korff; Gerald M Rubin; Julie H Simpson; Michael B Reiser; Kristin Branson
Journal:  Cell       Date:  2017-07-13       Impact factor: 41.582

3.  Non-overlapping Neural Networks in Hydra vulgaris.

Authors:  Christophe Dupre; Rafael Yuste
Journal:  Curr Biol       Date:  2017-03-30       Impact factor: 10.834

4.  A stochastic neuronal model predicts random search behaviors at multiple spatial scales in C. elegans.

Authors:  Steven B Augustine; Kristy J Lawton; Theodore H Lindsay; Tod R Thiele; William M Roberts; Eduardo J Izquierdo; Serge Faumont; Rebecca A Lindsay; Matthew Cale Britton; Navin Pokala; Cornelia I Bargmann; Shawn R Lockery
Journal:  Elife       Date:  2016-01-29       Impact factor: 8.140

5.  Global brain dynamics embed the motor command sequence of Caenorhabditis elegans.

Authors:  Saul Kato; Harris S Kaplan; Tina Schrödel; Susanne Skora; Theodore H Lindsay; Eviatar Yemini; Shawn Lockery; Manuel Zimmer
Journal:  Cell       Date:  2015-10-17       Impact factor: 41.582

6.  Feedback from network states generates variability in a probabilistic olfactory circuit.

Authors:  Andrew Gordus; Navin Pokala; Sagi Levy; Steven W Flavell; Cornelia I Bargmann
Journal:  Cell       Date:  2015-03-12       Impact factor: 41.582

7.  High-throughput ethomics in large groups of Drosophila.

Authors:  Kristin Branson; Alice A Robie; John Bender; Pietro Perona; Michael H Dickinson
Journal:  Nat Methods       Date:  2009-05-03       Impact factor: 28.547

8.  Automated monitoring and analysis of social behavior in Drosophila.

Authors:  Heiko Dankert; Liming Wang; Eric D Hoopfer; David J Anderson; Pietro Perona
Journal:  Nat Methods       Date:  2009-03-08       Impact factor: 28.547

9.  Serotonin and the neuropeptide PDF initiate and extend opposing behavioral states in C. elegans.

Authors:  Steven W Flavell; Navin Pokala; Evan Z Macosko; Dirk R Albrecht; Johannes Larsch; Cornelia I Bargmann
Journal:  Cell       Date:  2013-08-22       Impact factor: 41.582

10.  Dimensionality and dynamics in the behavior of C. elegans.

Authors:  Greg J Stephens; Bethany Johnson-Kerner; William Bialek; William S Ryu
Journal:  PLoS Comput Biol       Date:  2008-04-25       Impact factor: 4.475

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  11 in total

1.  Coordinated crawling via reinforcement learning.

Authors:  Shruti Mishra; Wim M van Rees; L Mahadevan
Journal:  J R Soc Interface       Date:  2020-08-26       Impact factor: 4.118

Review 2.  The Life of Behavior.

Authors:  Alex Gomez-Marin; Asif A Ghazanfar
Journal:  Neuron       Date:  2019-10-09       Impact factor: 17.173

Review 3.  The what, how, and why of naturalistic behavior.

Authors:  Ann Kennedy
Journal:  Curr Opin Neurobiol       Date:  2022-05-07       Impact factor: 7.070

4.  Unsupervised identification of the internal states that shape natural behavior.

Authors:  Adam J Calhoun; Jonathan W Pillow; Mala Murthy
Journal:  Nat Neurosci       Date:  2019-11-25       Impact factor: 24.884

5.  Temporal processing and context dependency in Caenorhabditis elegans response to mechanosensation.

Authors:  Mochi Liu; Anuj K Sharma; Joshua W Shaevitz; Andrew M Leifer
Journal:  Elife       Date:  2018-06-26       Impact factor: 8.140

6.  optoPAD, a closed-loop optogenetics system to study the circuit basis of feeding behaviors.

Authors:  José-Maria Moreira; Pavel M Itskov; Dennis Goldschmidt; Celia Baltazar; Kathrin Steck; Ibrahim Tastekin; Samuel J Walker; Carlos Ribeiro
Journal:  Elife       Date:  2019-06-22       Impact factor: 8.140

7.  Characterization of Proprioceptive System Dynamics in Behaving Drosophila Larvae Using High-Speed Volumetric Microscopy.

Authors:  Rebecca D Vaadia; Wenze Li; Venkatakaushik Voleti; Aditi Singhania; Elizabeth M C Hillman; Wesley B Grueber
Journal:  Curr Biol       Date:  2019-03-07       Impact factor: 10.834

8.  A microfluidic-induced C. elegans sleep state.

Authors:  Daniel L Gonzales; Jasmine Zhou; Bo Fan; Jacob T Robinson
Journal:  Nat Commun       Date:  2019-11-06       Impact factor: 14.919

9.  Discovery of a New Song Mode in Drosophila Reveals Hidden Structure in the Sensory and Neural Drivers of Behavior.

Authors:  Jan Clemens; Philip Coen; Frederic A Roemschied; Talmo D Pereira; David Mazumder; Diego E Aldarondo; Diego A Pacheco; Mala Murthy
Journal:  Curr Biol       Date:  2018-07-26       Impact factor: 10.834

Review 10.  Measuring behavior across scales.

Authors:  Gordon J Berman
Journal:  BMC Biol       Date:  2018-02-23       Impact factor: 7.431

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