Literature DB >> 28912216

A cargo-sorting DNA robot.

Anupama J Thubagere1, Wei Li1, Robert F Johnson1, Zibo Chen1, Shayan Doroudi2, Yae Lim Lee3, Gregory Izatt2,4, Sarah Wittman2, Niranjan Srinivas4, Damien Woods5, Erik Winfree1,2,4, Lulu Qian6,2.   

Abstract

Two critical challenges in the design and synthesis of molecular robots are modularity and algorithm simplicity. We demonstrate three modular building blocks for a DNA robot that performs cargo sorting at the molecular level. A simple algorithm encoding recognition between cargos and their destinations allows for a simple robot design: a single-stranded DNA with one leg and two foot domains for walking, and one arm and one hand domain for picking up and dropping off cargos. The robot explores a two-dimensional testing ground on the surface of DNA origami, picks up multiple cargos of two types that are initially at unordered locations, and delivers them to specified destinations until all molecules are sorted into two distinct piles. The robot is designed to perform a random walk without any energy supply. Exploiting this feature, a single robot can repeatedly sort multiple cargos. Localization on DNA origami allows for distinct cargo-sorting tasks to take place simultaneously in one test tube or for multiple robots to collectively perform the same task.
Copyright © 2017, American Association for the Advancement of Science.

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Year:  2017        PMID: 28912216     DOI: 10.1126/science.aan6558

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  59 in total

Review 1.  Designed and Evolved Nucleic Acid Nanotechnology: Contrast and Complementarity.

Authors:  Tulsi Ram Damase; Peter B Allen
Journal:  Bioconjug Chem       Date:  2019-01-03       Impact factor: 4.774

Review 2.  Bioapplications of DNA nanotechnology at the solid-liquid interface.

Authors:  Wenjing Wang; Sha Yu; Shan Huang; Sai Bi; Heyou Han; Jian-Rong Zhang; Yi Lu; Jun-Jie Zhu
Journal:  Chem Soc Rev       Date:  2019-09-16       Impact factor: 54.564

3.  Effective design principles for leakless strand displacement systems.

Authors:  Boya Wang; Chris Thachuk; Andrew D Ellington; Erik Winfree; David Soloveichik
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-13       Impact factor: 11.205

Review 4.  Switchable DNA-origami nanostructures that respond to their environment and their applications.

Authors:  Jasleen Kaur Daljit Singh; Minh Tri Luu; Ali Abbas; Shelley F J Wickham
Journal:  Biophys Rev       Date:  2018-10-02

Review 5.  Dynamic DNA Structures.

Authors:  Yingwei Zhang; Victor Pan; Xue Li; Xueqin Yang; Haofei Li; Pengfei Wang; Yonggang Ke
Journal:  Small       Date:  2019-04-10       Impact factor: 13.281

6.  A dissipative pathway for the structural evolution of DNA fibres.

Authors:  Felix J Rizzuto; Casey M Platnich; Xin Luo; Yao Shen; Michael D Dore; Christophe Lachance-Brais; Alba Guarné; Gonzalo Cosa; Hanadi F Sleiman
Journal:  Nat Chem       Date:  2021-08-09       Impact factor: 24.427

7.  Fractal assembly of micrometre-scale DNA origami arrays with arbitrary patterns.

Authors:  Grigory Tikhomirov; Philip Petersen; Lulu Qian
Journal:  Nature       Date:  2017-12-06       Impact factor: 49.962

8.  DNA bipedal motor walking dynamics: an experimental and theoretical study of the dependency on step size.

Authors:  Dinesh C Khara; John S Schreck; Toma E Tomov; Yaron Berger; Thomas E Ouldridge; Jonathan P K Doye; Eyal Nir
Journal:  Nucleic Acids Res       Date:  2018-02-16       Impact factor: 16.971

Review 9.  Building machines with DNA molecules.

Authors:  Hamid Ramezani; Hendrik Dietz
Journal:  Nat Rev Genet       Date:  2019-10-21       Impact factor: 53.242

10.  Nucleic Acid Strand Displacement with Synthetic mRNA Inputs in Living Mammalian Cells.

Authors:  Gourab Chatterjee; Yuan-Jyue Chen; Georg Seelig
Journal:  ACS Synth Biol       Date:  2018-11-20       Impact factor: 5.110

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