Literature DB >> 30561987

Designed and Evolved Nucleic Acid Nanotechnology: Contrast and Complementarity.

Tulsi Ram Damase1, Peter B Allen1.   

Abstract

In this review, we explore progress on DNA aptamers (evolved DNA), DNA circuits (designed DNA), and the newest projects that integrate both. Designed DNA nanotechnology includes static nanostructures, dynamic nanodevices, and reaction networks (sometimes called DNA circuits). DNA circuits are dynamic DNA reactions that perform computations and sequence-specific amplification. Directed evolution can be used to produce DNA that can recognize specific targets. Aptamers are evolved nucleic acids; they are produced artificially with an in vitro selection process. DNA aptamers are molecular recognition elements made of single-stranded DNA (ssDNA) with the potential to interact with proteins, small molecules, viruses, and even cells. Designed molecular structures can incorporate aptamers for applications with immediate practical impact.

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Year:  2019        PMID: 30561987      PMCID: PMC6938684          DOI: 10.1021/acs.bioconjchem.8b00810

Source DB:  PubMed          Journal:  Bioconjug Chem        ISSN: 1043-1802            Impact factor:   4.774


  93 in total

1.  The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution.

Authors:  F Mueller; I Sommer; P Baranov; R Matadeen; M Stoldt; J Wöhnert; M Görlach; M van Heel; R Brimacombe
Journal:  J Mol Biol       Date:  2000-04-21       Impact factor: 5.469

2.  A Versatile Approach Towards Nucleobase-Modified Aptamers.

Authors:  Fabian Tolle; Gerhard M Brändle; Daniel Matzner; Günter Mayer
Journal:  Angew Chem Int Ed Engl       Date:  2015-07-23       Impact factor: 15.336

Review 3.  Nanostructures in biodiagnostics.

Authors:  Nathaniel L Rosi; Chad A Mirkin
Journal:  Chem Rev       Date:  2005-04       Impact factor: 60.622

4.  A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine-Dalgarno interaction.

Authors:  Tatsuya Kaminishi; Daniel N Wilson; Chie Takemoto; Joerg M Harms; Masahito Kawazoe; Frank Schluenzen; Kyoko Hanawa-Suetsugu; Mikako Shirouzu; Paola Fucini; Shigeyuki Yokoyama
Journal:  Structure       Date:  2007-03       Impact factor: 5.006

5.  NGL viewer: web-based molecular graphics for large complexes.

Authors:  Alexander S Rose; Anthony R Bradley; Yana Valasatava; Jose M Duarte; Andreas Prlic; Peter W Rose
Journal:  Bioinformatics       Date:  2018-11-01       Impact factor: 6.937

Review 6.  Structure and dynamics of ribosomal RNA.

Authors:  S A Woodson; N B Leontis
Journal:  Curr Opin Struct Biol       Date:  1998-06       Impact factor: 6.809

7.  What would you do if you could sequence everything?

Authors:  Avak Kahvejian; John Quackenbush; John F Thompson
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

8.  Noncanonical self-assembly of multifunctional DNA nanoflowers for biomedical applications.

Authors:  Guizhi Zhu; Rong Hu; Zilong Zhao; Zhuo Chen; Xiaobing Zhang; Weihong Tan
Journal:  J Am Chem Soc       Date:  2013-10-28       Impact factor: 15.419

9.  Molecular aptamer beacon tuned DNA strand displacement to transform small molecules into DNA logic outputs.

Authors:  Jinbo Zhu; Libing Zhang; Zhixue Zhou; Shaojun Dong; Erkang Wang
Journal:  Chem Commun (Camb)       Date:  2014-02-17       Impact factor: 6.222

10.  Diagnostic applications of nucleic acid circuits.

Authors:  Cheulhee Jung; Andrew D Ellington
Journal:  Acc Chem Res       Date:  2014-05-14       Impact factor: 22.384

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