Literature DB >> 28902838

The cryo-electron microscopy structure of human transcription factor IIH.

Basil J Greber1,2, Thi Hoang Duong Nguyen1,2,3, Jie Fang4, Pavel V Afonine2, Paul D Adams2,5, Eva Nogales1,2,4,6.   

Abstract

Human transcription factor IIH (TFIIH) is part of the general transcriptional machinery required by RNA polymerase II for the initiation of eukaryotic gene transcription. Composed of ten subunits that add up to a molecular mass of about 500 kDa, TFIIH is also essential for nucleotide excision repair. The seven-subunit TFIIH core complex formed by XPB, XPD, p62, p52, p44, p34, and p8 is competent for DNA repair, while the CDK-activating kinase subcomplex, which includes the kinase activity of CDK7 as well as the cyclin H and MAT1 subunits, is additionally required for transcription initiation. Mutations in the TFIIH subunits XPB, XPD, and p8 lead to severe premature ageing and cancer propensity in the genetic diseases xeroderma pigmentosum, Cockayne syndrome, and trichothiodystrophy, highlighting the importance of TFIIH for cellular physiology. Here we present the cryo-electron microscopy structure of human TFIIH at 4.4 Å resolution. The structure reveals the molecular architecture of the TFIIH core complex, the detailed structures of its constituent XPB and XPD ATPases, and how the core and kinase subcomplexes of TFIIH are connected. Additionally, our structure provides insight into the conformational dynamics of TFIIH and the regulation of its activity.

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Year:  2017        PMID: 28902838      PMCID: PMC5844561          DOI: 10.1038/nature23903

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  32 in total

Review 1.  SF1 and SF2 helicases: family matters.

Authors:  Margaret E Fairman-Williams; Ulf-Peter Guenther; Eckhard Jankowsky
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

2.  Functional and structural studies of the nucleotide excision repair helicase XPD suggest a polarity for DNA translocation.

Authors:  Jochen Kuper; Stefanie C Wolski; Gudrun Michels; Caroline Kisker
Journal:  EMBO J       Date:  2011-11-11       Impact factor: 11.598

3.  Conserved XPB core structure and motifs for DNA unwinding: implications for pathway selection of transcription or excision repair.

Authors:  Li Fan; Andrew S Arvai; Priscilla K Cooper; Shigenori Iwai; Fumio Hanaoka; John A Tainer
Journal:  Mol Cell       Date:  2006-04-07       Impact factor: 17.970

4.  Double-stranded DNA translocase activity of transcription factor TFIIH and the mechanism of RNA polymerase II open complex formation.

Authors:  James Fishburn; Eric Tomko; Eric Galburt; Steven Hahn
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-16       Impact factor: 11.205

5.  Function of Conserved Topological Regions within the Saccharomyces cerevisiae Basal Transcription Factor TFIIH.

Authors:  Linda Warfield; Jie Luo; Jeffrey Ranish; Steven Hahn
Journal:  Mol Cell Biol       Date:  2016-09-12       Impact factor: 4.272

6.  Mechanism of DNA loading by the DNA repair helicase XPD.

Authors:  Diana Constantinescu-Aruxandei; Biljana Petrovic-Stojanovska; J Carlos Penedo; Malcolm F White; James H Naismith
Journal:  Nucleic Acids Res       Date:  2016-02-20       Impact factor: 16.971

7.  Different forms of TFIIH for transcription and DNA repair: holo-TFIIH and a nucleotide excision repairosome.

Authors:  J Q Svejstrup; Z Wang; W J Feaver; X Wu; D A Bushnell; T F Donahue; E C Friedberg; R D Kornberg
Journal:  Cell       Date:  1995-01-13       Impact factor: 41.582

8.  Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH.

Authors:  Jie Luo; Peter Cimermancic; Shruthi Viswanath; Christopher C Ebmeier; Bong Kim; Marine Dehecq; Vishnu Raman; Charles H Greenberg; Riccardo Pellarin; Andrej Sali; Dylan J Taatjes; Steven Hahn; Jeff Ranish
Journal:  Mol Cell       Date:  2015-09-03       Impact factor: 17.970

9.  Mutations in the XPD helicase gene result in XP and TTD phenotypes, preventing interaction between XPD and the p44 subunit of TFIIH.

Authors:  F Coin; J C Marinoni; C Rodolfo; S Fribourg; A M Pedrini; J M Egly
Journal:  Nat Genet       Date:  1998-10       Impact factor: 38.330

10.  Crystal structure of the FeS cluster-containing nucleotide excision repair helicase XPD.

Authors:  Stefanie C Wolski; Jochen Kuper; Petra Hänzelmann; James J Truglio; Deborah L Croteau; Bennett Van Houten; Caroline Kisker
Journal:  PLoS Biol       Date:  2008-06-24       Impact factor: 8.029

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  38 in total

1.  Small molecule-based targeting of TTD-A dimerization to control TFIIH transcriptional activity represents a potential strategy for anticancer therapy.

Authors:  Virginie Gervais; Isabelle Muller; Pierre-Olivier Mari; Amandine Mourcet; Kumar Tekwani Movellan; Pascal Ramos; Julien Marcoux; Valérie Guillet; Sumaira Javaid; Odile Burlet-Schiltz; Georges Czaplicki; Alain Milon; Giuseppina Giglia-Mari
Journal:  J Biol Chem       Date:  2018-08-01       Impact factor: 5.157

2.  Transcription with a laser: Radiation-damage-free diffraction of RNA Polymerase II crystals.

Authors:  Guowu Lin; Simon C Weiss; Sandra Vergara; Carlos Camacho; Guillermo Calero
Journal:  Methods       Date:  2019-04-25       Impact factor: 3.608

3.  Near-atomic cryo-EM imaging of a small protein displayed on a designed scaffolding system.

Authors:  Yuxi Liu; Shane Gonen; Tamir Gonen; Todd O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-05       Impact factor: 11.205

Review 4.  High-resolution cryo-EM structures of TFIIH and their functional implications.

Authors:  Eva Nogales; Basil J Greber
Journal:  Curr Opin Struct Biol       Date:  2019-10-07       Impact factor: 6.809

5.  Structures of mammalian RNA polymerase II pre-initiation complexes.

Authors:  Shintaro Aibara; Sandra Schilbach; Patrick Cramer
Journal:  Nature       Date:  2021-04-26       Impact factor: 49.962

Review 6.  Molecular basis for damage recognition and verification by XPC-RAD23B and TFIIH in nucleotide excision repair.

Authors:  Hong Mu; Nicholas E Geacintov; Suse Broyde; Jung-Eun Yeo; Orlando D Schärer
Journal:  DNA Repair (Amst)       Date:  2018-08-23

Review 7.  Envisioning how the prototypic molecular machine TFIIH functions in transcription initiation and DNA repair.

Authors:  Susan E Tsutakawa; Chi-Lin Tsai; Chunli Yan; Amer Bralić; Walter J Chazin; Samir M Hamdan; Orlando D Schärer; Ivaylo Ivanov; John A Tainer
Journal:  DNA Repair (Amst)       Date:  2020-09-17

8.  Biochemical methods to characterize RNA polymerase II elongation complexes.

Authors:  J Brooks Crickard; Joseph C Reese
Journal:  Methods       Date:  2019-01-24       Impact factor: 3.608

9.  Simulation-Based Methods for Model Building and Refinement in Cryoelectron Microscopy.

Authors:  Thomas Dodd; Chunli Yan; Ivaylo Ivanov
Journal:  J Chem Inf Model       Date:  2020-03-31       Impact factor: 4.956

Review 10.  The Structures of Eukaryotic Transcription Pre-initiation Complexes and Their Functional Implications.

Authors:  Basil J Greber; Eva Nogales
Journal:  Subcell Biochem       Date:  2019
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