Literature DB >> 31939151

The Structures of Eukaryotic Transcription Pre-initiation Complexes and Their Functional Implications.

Basil J Greber1,2, Eva Nogales3,4,5,6.   

Abstract

Transcription is a highly regulated process that supplies living cells with coding and non-coding RNA molecules. Failure to properly regulate transcription is associated with human pathologies, including cancers. RNA polymerase II is the enzyme complex that synthesizes messenger RNAs that are then translated into proteins. In spite of its complexity, RNA polymerase requires a plethora of general transcription factors to be recruited to the transcription start site as part of a large transcription pre-initiation complex, and to help it gain access to the transcribed strand of the DNA. This chapter reviews the structure and function of these eukaryotic transcription pre-initiation complexes, with a particular emphasis on two of its constituents, the multisubunit complexes TFIID and TFIIH. We also compare the overall architecture of the RNA polymerase II pre-initiation complex with those of RNA polymerases I and III, involved in transcription of ribosomal RNA and non-coding RNAs such as tRNAs and snRNAs, and discuss the general, conserved features that are applicable to all eukaryotic RNA polymerase systems.

Entities:  

Keywords:  Cryo-electron microscopy; Gene expression; General transcription factors; Initiation; RNA polymerase; Structural biology; TFIID; TFIIH; Transcription

Mesh:

Substances:

Year:  2019        PMID: 31939151      PMCID: PMC7025760          DOI: 10.1007/978-3-030-28151-9_5

Source DB:  PubMed          Journal:  Subcell Biochem        ISSN: 0306-0225


  276 in total

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Journal:  Science       Date:  2001-04-19       Impact factor: 47.728

2.  A novel TBP-associated factor of SL1 functions in RNA polymerase I transcription.

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Journal:  EMBO J       Date:  2007-02-22       Impact factor: 11.598

3.  Cryo-EM reveals promoter DNA binding and conformational flexibility of the general transcription factor TFIID.

Authors:  Hans Elmlund; Vera Baraznenok; Tomas Linder; Zsolt Szilagyi; Reza Rofougaran; Anders Hofer; Hans Hebert; Martin Lindahl; Claes M Gustafsson
Journal:  Structure       Date:  2009-11-11       Impact factor: 5.006

4.  Purification and characterization of a transcription factor that confers promoter specificity to human RNA polymerase I.

Authors:  R M Learned; S Cordes; R Tjian
Journal:  Mol Cell Biol       Date:  1985-06       Impact factor: 4.272

Review 5.  Transcription regulation by the Mediator complex.

Authors:  Julie Soutourina
Journal:  Nat Rev Mol Cell Biol       Date:  2017-12-06       Impact factor: 94.444

6.  Identification of novel functional TBP-binding sites and general factor repertoires.

Authors:  Sergey Denissov; Marc van Driel; Renate Voit; Maarten Hekkelman; Tim Hulsen; Nouria Hernandez; Ingrid Grummt; Ron Wehrens; Hendrik Stunnenberg
Journal:  EMBO J       Date:  2007-02-01       Impact factor: 11.598

7.  ARCH domain of XPD, an anchoring platform for CAK that conditions TFIIH DNA repair and transcription activities.

Authors:  Wassim Abdulrahman; Izarn Iltis; Laura Radu; Cathy Braun; Anne Maglott-Roth; Christophe Giraudon; Jean-Marc Egly; Arnaud Poterszman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

8.  The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila.

Authors:  T W Burke; J T Kadonaga
Journal:  Genes Dev       Date:  1997-11-15       Impact factor: 11.361

9.  Dual role of TFIIH in DNA excision repair and in transcription by RNA polymerase II.

Authors:  R Drapkin; J T Reardon; A Ansari; J C Huang; L Zawel; K Ahn; A Sancar; D Reinberg
Journal:  Nature       Date:  1994-04-21       Impact factor: 49.962

10.  Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2.

Authors:  Jerome Gouge; Karishma Satia; Nicolas Guthertz; Marcella Widya; Andrew James Thompson; Pascal Cousin; Oleksandr Dergai; Nouria Hernandez; Alessandro Vannini
Journal:  Cell       Date:  2015-12-03       Impact factor: 41.582

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Review 4.  Enhancer-promoter communication: hubs or loops?

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Review 5.  How structural biology transformed studies of transcription regulation.

Authors:  Cynthia Wolberger
Journal:  J Biol Chem       Date:  2021-05-03       Impact factor: 5.157

Review 6.  Enzymatic Protein Biopolymers as a Tool to Synthetize Eukaryotic Messenger Ribonucleic Acid (mRNA) with Uses in Vaccination, Immunotherapy and Nanotechnology.

Authors:  Fabiola Urbina; Sebastián Morales-Pison; Edio Maldonado
Journal:  Polymers (Basel)       Date:  2020-07-23       Impact factor: 4.329

7.  A landscape of gene regulation in the parasitic amoebozoa Entamoeba spp.

Authors:  Edgardo Galán-Vásquez; María Del Consuelo Gómez-García; Ernesto Pérez-Rueda
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Review 8.  Regulation of Eukaryotic RNAPs Activities by Phosphorylation.

Authors:  Araceli González-Jiménez; Adrián Campos; Francisco Navarro; Andrés Clemente-Blanco; Olga Calvo
Journal:  Front Mol Biosci       Date:  2021-06-25

Review 9.  XPA: DNA Repair Protein of Significant Clinical Importance.

Authors:  Lucia Borszéková Pulzová; Thomas A Ward; Miroslav Chovanec
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10.  Nuclear export restricts Gdown1 to a mitotic function.

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