Literature DB >> 28877501

PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models.

Stephen K Burley1, Genji Kurisu2, John L Markley3, Haruki Nakamura2, Sameer Velankar4, Helen M Berman5, Andrej Sali6, Torsten Schwede7, Jill Trewhella8.   

Abstract

Burley et al. (leadership of the Worldwide PDB [wwPDB] Partnership [wwpdb.org] and the wwPDB Integrative/Hybrid Methods Task Force) announce public release of a prototype system for depositing integrative/hybrid structural models, PDB-Development (PDB-Dev; https://pdb-dev.wwpdb.org).
Copyright © 2017. Published by Elsevier Ltd.

Entities:  

Mesh：

Substances：

Year:  2017        PMID： 28877501      PMCID： PMC5821105          DOI： 10.1016/j.str.2017.08.001

Source DB:  PubMed          Journal:  Structure        ISSN： 0969-2126            Impact factor:   5.006


  4 in total

1.  Biochemistry. Integrative structural biology.

Authors:  Andrew B Ward; Andrej Sali; Ian A Wilson
Journal:  Science       Date:  2013-02-22       Impact factor: 47.728

2.  Structural characterization by cross-linking reveals the detailed architecture of a coatomer-related heptameric module from the nuclear pore complex.

Authors:  Yi Shi; Javier Fernandez-Martinez; Elina Tjioe; Riccardo Pellarin; Seung Joong Kim; Rosemary Williams; Dina Schneidman-Duhovny; Andrej Sali; Michael P Rout; Brian T Chait
Journal:  Mol Cell Proteomics       Date:  2014-08-26       Impact factor: 5.911

3.  Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies.

Authors:  Daniel Russel; Keren Lasker; Ben Webb; Javier Velázquez-Muriel; Elina Tjioe; Dina Schneidman-Duhovny; Bret Peterson; Andrej Sali
Journal:  PLoS Biol       Date:  2012-01-17       Impact factor: 8.029

4.  Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop.

Authors:  Andrej Sali; Helen M Berman; Torsten Schwede; Jill Trewhella; Gerard Kleywegt; Stephen K Burley; John Markley; Haruki Nakamura; Paul Adams; Alexandre M J J Bonvin; Wah Chiu; Matteo Dal Peraro; Frank Di Maio; Thomas E Ferrin; Kay Grünewald; Aleksandras Gutmanas; Richard Henderson; Gerhard Hummer; Kenji Iwasaki; Graham Johnson; Catherine L Lawson; Jens Meiler; Marc A Marti-Renom; Gaetano T Montelione; Michael Nilges; Ruth Nussinov; Ardan Patwardhan; Juri Rappsilber; Randy J Read; Helen Saibil; Gunnar F Schröder; Charles D Schwieters; Claus A M Seidel; Dmitri Svergun; Maya Topf; Eldon L Ulrich; Sameer Velankar; John D Westbrook
Journal:  Structure       Date:  2015-06-18       Impact factor: 5.006
  4 in total
  30 in total

1.  Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules.

Authors:  Brinda Vallat; Benjamin Webb; John D Westbrook; Andrej Sali; Helen M Berman
Journal:  Structure       Date:  2018-04-12       Impact factor: 5.006

2.  The Protein Data Bank Archive.

Authors:  Sameer Velankar; Stephen K Burley; Genji Kurisu; Jeffrey C Hoch; John L Markley
Journal:  Methods Mol Biol       Date:  2021

Review 3.  Principles for Integrative Structural Biology Studies.

Authors:  Michael P Rout; Andrej Sali
Journal:  Cell       Date:  2019-05-30       Impact factor: 41.582

4.  CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation.

Authors:  Axel F Brilot; Andrew S Lyon; Alex Zelter; Shruthi Viswanath; Alison Maxwell; Michael J MacCoss; Eric G Muller; Andrej Sali; Trisha N Davis; David A Agard
Journal:  Elife       Date:  2021-05-05       Impact factor: 8.140

5.  Integrative structure modeling with the Integrative Modeling Platform.

Authors:  Benjamin Webb; Shruthi Viswanath; Massimiliano Bonomi; Riccardo Pellarin; Charles H Greenberg; Daniel Saltzberg; Andrej Sali
Journal:  Protein Sci       Date:  2017-10-10       Impact factor: 6.725

Review 6.  Opportunities and Challenges in Building a Spatiotemporal Multi-scale Model of the Human Pancreatic β Cell.

Authors:  Jitin Singla; Kyle M McClary; Kate L White; Frank Alber; Andrej Sali; Raymond C Stevens
Journal:  Cell       Date:  2018-03-22       Impact factor: 41.582

7.  Architectural Features of Human Mitochondrial Cysteine Desulfurase Complexes from Crosslinking Mass Spectrometry and Small-Angle X-Ray Scattering.

Authors:  Kai Cai; Ronnie O Frederick; Hesam Dashti; John L Markley
Journal:  Structure       Date:  2018-07-05       Impact factor: 5.006

8.  Genetic interaction mapping informs integrative structure determination of protein complexes.

Authors:  Hannes Braberg; Ignacia Echeverria; Stefan Bohn; Peter Cimermancic; Anthony Shiver; Richard Alexander; Jiewei Xu; Michael Shales; Raghuvar Dronamraju; Shuangying Jiang; Gajendradhar Dwivedi; Derek Bogdanoff; Kaitlin K Chaung; Ruth Hüttenhain; Shuyi Wang; David Mavor; Riccardo Pellarin; Dina Schneidman; Joel S Bader; James S Fraser; John Morris; James E Haber; Brian D Strahl; Carol A Gross; Junbiao Dai; Jef D Boeke; Andrej Sali; Nevan J Krogan
Journal:  Science       Date:  2020-12-11       Impact factor: 47.728

Review 9.  Anticipating innovations in structural biology.

Authors:  Helen M Berman; Catherine L Lawson; Brinda Vallat; Margaret J Gabanyi
Journal:  Q Rev Biophys       Date:  2018-01       Impact factor: 5.318

10.  Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures.

Authors:  Helen M Berman; Paul D Adams; Alexandre A Bonvin; Stephen K Burley; Bridget Carragher; Wah Chiu; Frank DiMaio; Thomas E Ferrin; Margaret J Gabanyi; Thomas D Goddard; Patrick R Griffin; Juergen Haas; Christian A Hanke; Jeffrey C Hoch; Gerhard Hummer; Genji Kurisu; Catherine L Lawson; Alexander Leitner; John L Markley; Jens Meiler; Gaetano T Montelione; George N Phillips; Thomas Prisner; Juri Rappsilber; David C Schriemer; Torsten Schwede; Claus A M Seidel; Timothy S Strutzenberg; Dmitri I Svergun; Emad Tajkhorshid; Jill Trewhella; Brinda Vallat; Sameer Velankar; Geerten W Vuister; Benjamin Webb; John D Westbrook; Kate L White; Andrej Sali
Journal:  Structure       Date:  2019-11-25       Impact factor: 5.006
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.