Literature DB >> 30912485

Anticipating innovations in structural biology.

Helen M Berman1, Catherine L Lawson1, Brinda Vallat1, Margaret J Gabanyi1.   

Abstract

In this review, we describe how the interplay among science, technology and community interests contributed to the evolution of four structural biology data resources. We present the method by which data deposited by scientists are prepared for worldwide distribution, and argue that data archiving in a trusted repository must be an integral part of any scientific investigation.

Entities:  

Keywords:  Protein Data Bank; community data resources; data standards; structural biology; structural genomics

Mesh：

Substances：

Year:  2018        PMID： 30912485      PMCID： PMC6438187          DOI： 10.1017/S0033583518000057

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN： 0033-5835            Impact factor:   5.318


  98 in total

1.  EMDep: a web-based system for the deposition and validation of high-resolution electron microscopy macromolecular structural information.

Authors:  K Henrick; R Newman; M Tagari; M Chagoyen
Journal:  J Struct Biol       Date:  2003 Oct-Nov       Impact factor: 2.867

2.  Announcing the worldwide Protein Data Bank.

Authors:  Helen Berman; Kim Henrick; Haruki Nakamura
Journal:  Nat Struct Biol       Date:  2003-12

3.  Comparison of protein crystal diffraction patterns and absolute intensities from synchrotron and conventional x-ray sources.

Authors:  A Harmsen; R Leberman; G E Schulz
Journal:  J Mol Biol       Date:  1976-06-14       Impact factor: 5.469

4.  Structure of yeast phenylalanine tRNA at 3 A resolution.

Authors:  J D Robertus; J E Ladner; J T Finch; D Rhodes; R S Brown; B F Clark; A Klug
Journal:  Nature       Date:  1974-08-16       Impact factor: 49.962

5.  The structure of a T = 1 icosahedral empty particle from southern bean mosaic virus.

Authors:  J W Erickson; A M Silva; M R Murthy; I Fita; M G Rossmann
Journal:  Science       Date:  1985-08-16       Impact factor: 47.728

6.  Direct phase determination based on anomalous scattering.

Authors:  W A Hendrickson; J L Smith; S Sheriff
Journal:  Methods Enzymol       Date:  1985       Impact factor: 1.600

7.  Cryo-EM structure of the DNA-PK holoenzyme.

Authors:  Humayun Sharif; Yang Li; Yuanchen Dong; Liyi Dong; Wei Li Wang; Youdong Mao; Hao Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-26       Impact factor: 11.205

8.  Outcome of the first electron microscopy validation task force meeting.

Authors:  Richard Henderson; Andrej Sali; Matthew L Baker; Bridget Carragher; Batsal Devkota; Kenneth H Downing; Edward H Egelman; Zukang Feng; Joachim Frank; Nikolaus Grigorieff; Wen Jiang; Steven J Ludtke; Ohad Medalia; Pawel A Penczek; Peter B Rosenthal; Michael G Rossmann; Michael F Schmid; Gunnar F Schröder; Alasdair C Steven; David L Stokes; John D Westbrook; Willy Wriggers; Huanwang Yang; Jasmine Young; Helen M Berman; Wah Chiu; Gerard J Kleywegt; Catherine L Lawson
Journal:  Structure       Date:  2012-02-08       Impact factor: 5.006

9.  Channel opening and gating mechanism in AMPA-subtype glutamate receptors.

Authors:  Edward C Twomey; Maria V Yelshanskaya; Robert A Grassucci; Joachim Frank; Alexander I Sobolevsky
Journal:  Nature       Date:  2017-07-24       Impact factor: 49.962

10.  BioMagResBank.

Authors:  Eldon L Ulrich; Hideo Akutsu; Jurgen F Doreleijers; Yoko Harano; Yannis E Ioannidis; Jundong Lin; Miron Livny; Steve Mading; Dimitri Maziuk; Zachary Miller; Eiichi Nakatani; Christopher F Schulte; David E Tolmie; R Kent Wenger; Hongyang Yao; John L Markley
Journal:  Nucleic Acids Res       Date:  2007-11-04       Impact factor: 16.971
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  2 in total

Review 1.  From integrative structural biology to cell biology.

Authors:  Andrej Sali
Journal:  J Biol Chem       Date:  2021-05-03       Impact factor: 5.157

Review 2.  Evolution of Standardization and Dissemination of Cryo-EM Structures and Data Jointly by the Community, PDB and EMDB.

Authors:  Wah Chiu; Michael F Schmid; Grigore Pintilie; Catherine L Lawson
Journal:  J Biol Chem       Date:  2021-03-17       Impact factor: 5.157
  2 in total

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