Literature DB >> 28845484

Sparse Bayesian Inference of White Matter Fiber Orientations from Compressed Multi-resolution Diffusion MRI.

Pramod Kumar Pisharady1, Julio M Duarte-Carvajalino1, Stamatios N Sotiropoulos2, Guillermo Sapiro3,4, Christophe Lenglet1.   

Abstract

The RubiX [1] algorithm combines high SNR characteristics of low resolution data with high spacial specificity of high resolution data, to extract microstructural tissue parameters from diffusion MRI. In this paper we focus on estimating crossing fiber orientations and introduce sparsity to the RubiX algorithm, making it suitable for reconstruction from compressed (under-sampled) data. We propose a sparse Bayesian algorithm for estimation of fiber orientations and volume fractions from compressed diffusion MRI. The data at high resolution is modeled using a parametric spherical deconvolution approach and represented using a dictionary created with the exponential decay components along different possible directions. Volume fractions of fibers along these orientations define the dictionary weights. The data at low resolution is modeled using a spatial partial volume representation. The proposed dictionary representation and sparsity priors consider the dependence between fiber orientations and the spatial redundancy in data representation. Our method exploits the sparsity of fiber orientations, therefore facilitating inference from under-sampled data. Experimental results show improved accuracy and decreased uncertainty in fiber orientation estimates. For under-sampled data, the proposed method is also shown to produce more robust estimates of fiber orientations.

Entities:  

Keywords:  Sparse Bayesian inference; brain imaging; compressive sensing; diffusion MRI; fiber orientation; linear un-mixing

Year:  2015        PMID: 28845484      PMCID: PMC5568854          DOI: 10.1007/978-3-319-24553-9_15

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  9 in total

1.  Characterization and propagation of uncertainty in diffusion-weighted MR imaging.

Authors:  T E J Behrens; M W Woolrich; M Jenkinson; H Johansen-Berg; R G Nunes; S Clare; P M Matthews; J M Brady; S M Smith
Journal:  Magn Reson Med       Date:  2003-11       Impact factor: 4.668

2.  Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions.

Authors:  Benoit Scherrer; Ali Gholipour; Simon K Warfield
Journal:  Med Image Anal       Date:  2012-06-19       Impact factor: 8.545

3.  Compartment models of the diffusion MR signal in brain white matter: a taxonomy and comparison.

Authors:  Eleftheria Panagiotaki; Torben Schneider; Bernard Siow; Matt G Hall; Mark F Lythgoe; Daniel C Alexander
Journal:  Neuroimage       Date:  2011-10-07       Impact factor: 6.556

4.  Low-rank plus sparse matrix decomposition for accelerated dynamic MRI with separation of background and dynamic components.

Authors:  Ricardo Otazo; Emmanuel Candès; Daniel K Sodickson
Journal:  Magn Reson Med       Date:  2014-04-23       Impact factor: 4.668

5.  Comparison of sampling strategies and sparsifying transforms to improve compressed sensing diffusion spectrum imaging.

Authors:  Michael Paquette; Sylvain Merlet; Guillaume Gilbert; Rachid Deriche; Maxime Descoteaux
Journal:  Magn Reson Med       Date:  2014-01-29       Impact factor: 4.668

6.  Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?

Authors:  T E J Behrens; H Johansen Berg; S Jbabdi; M F S Rushworth; M W Woolrich
Journal:  Neuroimage       Date:  2006-10-27       Impact factor: 6.556

7.  RubiX: combining spatial resolutions for Bayesian inference of crossing fibers in diffusion MRI.

Authors:  Stamatios N Sotiropoulos; Saad Jbabdi; Jesper L Andersson; Mark W Woolrich; Kamil Ugurbil; Timothy E J Behrens
Journal:  IEEE Trans Med Imaging       Date:  2013-01-25       Impact factor: 10.048

8.  Advances in diffusion MRI acquisition and processing in the Human Connectome Project.

Authors:  Stamatios N Sotiropoulos; Saad Jbabdi; Junqian Xu; Jesper L Andersson; Steen Moeller; Edward J Auerbach; Matthew F Glasser; Moises Hernandez; Guillermo Sapiro; Mark Jenkinson; David A Feinberg; Essa Yacoub; Christophe Lenglet; David C Van Essen; Kamil Ugurbil; Timothy E J Behrens
Journal:  Neuroimage       Date:  2013-05-20       Impact factor: 6.556

9.  Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project.

Authors:  Kamil Uğurbil; Junqian Xu; Edward J Auerbach; Steen Moeller; An T Vu; Julio M Duarte-Carvajalino; Christophe Lenglet; Xiaoping Wu; Sebastian Schmitter; Pierre Francois Van de Moortele; John Strupp; Guillermo Sapiro; Federico De Martino; Dingxin Wang; Noam Harel; Michael Garwood; Liyong Chen; David A Feinberg; Stephen M Smith; Karla L Miller; Stamatios N Sotiropoulos; Saad Jbabdi; Jesper L R Andersson; Timothy E J Behrens; Matthew F Glasser; David C Van Essen; Essa Yacoub
Journal:  Neuroimage       Date:  2013-05-21       Impact factor: 6.556

  9 in total
  4 in total

1.  Estimation of white matter fiber parameters from compressed multiresolution diffusion MRI using sparse Bayesian learning.

Authors:  Pramod Kumar Pisharady; Stamatios N Sotiropoulos; Julio M Duarte-Carvajalino; Guillermo Sapiro; Christophe Lenglet
Journal:  Neuroimage       Date:  2017-06-29       Impact factor: 6.556

2.  Self-navigation for 3D multishot EPI with data-reference.

Authors:  Steen Moeller; Sudhir Ramanna; Christophe Lenglet; Pramod K Pisharady; Edward J Auerbach; Lance Delabarre; Xiaoping Wu; Mehmet Akcakaya; Kamil Ugurbil
Journal:  Magn Reson Med       Date:  2020-03-02       Impact factor: 4.668

3.  A Sparse Bayesian Learning Algorithm for White Matter Parameter Estimation from Compressed Multi-shell Diffusion MRI.

Authors:  Pramod Kumar Pisharady; Stamatios N Sotiropoulos; Guillermo Sapiro; Christophe Lenglet
Journal:  Med Image Comput Comput Assist Interv       Date:  2017-09-04

4.  Fusion in diffusion MRI for improved fibre orientation estimation: An application to the 3T and 7T data of the Human Connectome Project.

Authors:  Stamatios N Sotiropoulos; Moisés Hernández-Fernández; An T Vu; Jesper L Andersson; Steen Moeller; Essa Yacoub; Christophe Lenglet; Kamil Ugurbil; Timothy E J Behrens; Saad Jbabdi
Journal:  Neuroimage       Date:  2016-04-09       Impact factor: 6.556

  4 in total

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