Literature DB >> 29104968

A Sparse Bayesian Learning Algorithm for White Matter Parameter Estimation from Compressed Multi-shell Diffusion MRI.

Pramod Kumar Pisharady1, Stamatios N Sotiropoulos2,3, Guillermo Sapiro4,5, Christophe Lenglet1.   

Abstract

We propose a sparse Bayesian learning algorithm for improved estimation of white matter fiber parameters from compressed (under-sampled q-space) multi-shell diffusion MRI data. The multi-shell data is represented in a dictionary form using a non-monoexponential decay model of diffusion, based on continuous gamma distribution of diffusivities. The fiber volume fractions with predefined orientations, which are the unknown parameters, form the dictionary weights. These unknown parameters are estimated with a linear un-mixing framework, using a sparse Bayesian learning algorithm. A localized learning of hyperparameters at each voxel and for each possible fiber orientations improves the parameter estimation. Our experiments using synthetic data from the ISBI 2012 HARDI reconstruction challenge and in-vivo data from the Human Connectome Project demonstrate the improvements.

Entities:  

Keywords:  Sparse Bayesian learning; diffusion MRI; linear un-mixing; multi-shell; sparse signal recovery

Mesh:

Year:  2017        PMID: 29104968      PMCID: PMC5667569          DOI: 10.1007/978-3-319-66182-7_69

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  19 in total

1.  Characterization and propagation of uncertainty in diffusion-weighted MR imaging.

Authors:  T E J Behrens; M W Woolrich; M Jenkinson; H Johansen-Berg; R G Nunes; S Clare; P M Matthews; J M Brady; S M Smith
Journal:  Magn Reson Med       Date:  2003-11       Impact factor: 4.668

2.  Probabilistic ODF estimation from reduced HARDI data with sparse regularization.

Authors:  Antonio Tristán-Vega; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

3.  Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI.

Authors:  Alessandro Daducci; Erick Jorge Canales-Rodríguez; Maxime Descoteaux; Eleftherios Garyfallidis; Yaniv Gur; Ying-Chia Lin; Merry Mani; Sylvain Merlet; Michael Paquette; Alonso Ramirez-Manzanares; Marco Reisert; Paulo Reis Rodrigues; Farshid Sepehrband; Emmanuel Caruyer; Jeiran Choupan; Rachid Deriche; Mathews Jacob; Gloria Menegaz; Vesna Prčkovska; Mariano Rivera; Yves Wiaux; Jean-Philippe Thiran
Journal:  IEEE Trans Med Imaging       Date:  2013-10-11       Impact factor: 10.048

4.  Diffusion orientation transform revisited.

Authors:  Erick Jorge Canales-Rodríguez; Ching-Po Lin; Yasser Iturria-Medina; Chun-Hung Yeh; Kuan-Hung Cho; Lester Melie-García
Journal:  Neuroimage       Date:  2009-10-06       Impact factor: 6.556

5.  Sparse regularization for fiber ODF reconstruction: from the suboptimality of ℓ2 and ℓ1 priors to ℓ0.

Authors:  Alessandro Daducci; Dimitri Van De Ville; Jean-Philippe Thiran; Yves Wiaux
Journal:  Med Image Anal       Date:  2014-02-17       Impact factor: 8.545

6.  Sparse multi-shell diffusion imaging.

Authors:  Yogesh Rathi; O Michailovich; K Setsompop; S Bouix; M E Shenton; C F Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

Review 7.  The WU-Minn Human Connectome Project: an overview.

Authors:  David C Van Essen; Stephen M Smith; Deanna M Barch; Timothy E J Behrens; Essa Yacoub; Kamil Ugurbil
Journal:  Neuroimage       Date:  2013-05-16       Impact factor: 6.556

8.  Model-based analysis of multishell diffusion MR data for tractography: how to get over fitting problems.

Authors:  Saad Jbabdi; Stamatios N Sotiropoulos; Alexander M Savio; Manuel Graña; Timothy E J Behrens
Journal:  Magn Reson Med       Date:  2012-02-14       Impact factor: 4.668

9.  Informatics and data mining tools and strategies for the human connectome project.

Authors:  Daniel S Marcus; John Harwell; Timothy Olsen; Michael Hodge; Matthew F Glasser; Fred Prior; Mark Jenkinson; Timothy Laumann; Sandra W Curtiss; David C Van Essen
Journal:  Front Neuroinform       Date:  2011-06-27       Impact factor: 4.081

10.  Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?

Authors:  T E J Behrens; H Johansen Berg; S Jbabdi; M F S Rushworth; M W Woolrich
Journal:  Neuroimage       Date:  2006-10-27       Impact factor: 6.556

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